PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG405600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 714aa    MW: 77790.6 Da    PI: 4.528
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG405600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM146.41.6e-45101352128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                          ppGfrF+Ptdeelv ++Lk+++ + + +    ++++d+yk++P++Lp+  ++++++k+w+fFs+ d+ky++g+r++r+t +gyWkatgkd
  Pavir.2NG405600.1.p  10 PPGFRFSPTDEELVLYFLKRRIVSGRPSP--YVADIDVYKSHPSHLPErsALQTGDKQWFFFSRMDRKYPNGSRASRTTGDGYWKATGKD 97 
                          8********************88888555..69*************9435788899********************************** PP

                  NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          + ++  +g++vg kktLv+++grap+ge+tdWvmhey+l
  Pavir.2NG405600.1.p  98 RFICG-GGRAVGNKKTLVYHHGRAPRGERTDWVMHEYTL 135
                          ****9.99*****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-527158IPR003441NAC domain
PROSITE profilePS5100551.6999158IPR003441NAC domain
PfamPF023657.4E-2410135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MEAPPPRRWP PGFRFSPTDE ELVLYFLKRR IVSGRPSPYV ADIDVYKSHP SHLPERSALQ  60
TGDKQWFFFS RMDRKYPNGS RASRTTGDGY WKATGKDRFI CGGGRAVGNK KTLVYHHGRA  120
PRGERTDWVM HEYTLLADAL PPAAQGRESY ALYKLFQKSG AGPKNGEQYG APFREEDWLD  180
DDEEGVTAGA PPNPVPNNNN CPATVEEHAI ADRELPIEDL DELLPQIGND EEFGEAQLDF  240
SAPATSHGQS QGWLSEGGDK AEVVDASISS GAGVAAENTC TGLPLGDIEQ LLMQMSDDQQ  300
NAELFSGLST SVPQLQLQCD DHQVWLDAHK EPEVCAPDPT TSSGAVVTAE CADTEFGDLE  360
GLLLQIANEQ DMVEPQSDLS GPIPYHNFNQ VGIGDFHESH GAPVGNLSCI VQESTFNPQT  420
EPRSQFPQSN LTNAPFSGET NSFEGTSVPR SVSGLISYNS QDADEEFLEI NDFFDLEGVE  480
HSANCTATEH LISATNGMFD NLEYSDAHTF LPGPFDTVGV VAENQFFDFG NTGIQDQGYQ  540
YTTEVTTHNQ AALNVRSHMK HTHVVLPSHA SGTLNLHAAN EAPNRSSTAS QSWFNAALSA  600
LLDSVPSSPA LAAEIENSVI NKTLQRISSF RSHQASGEEN TVINRTLHRI SSFRSQQAAS  660
EQPSTTRIQV TRGGRLMFIS LLVILSAVMW TFTAGSAGSA LNFCKGLWKS SSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-421013516140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.125290.0callus| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG405600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802095.10.0NAC domain-containing protein 82-like
TrEMBLA0A2S3H1B90.0A0A2S3H1B9_9POAL; Uncharacterized protein
STRINGPavir.Ba01681.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91282840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.11e-67NAC domain containing protein 17