PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG403800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 345aa    MW: 36607.2 Da    PI: 7.585
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG403800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.33.1e-14122173155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +r++h ++Er+RR+++N+ ++ Lr+l+P a   ++++ + a+i+  A++++k+L+
  Pavir.2NG403800.1.p 122 QRMTHIAVERNRRKQMNEYLAVLRSLMPAA---NAQRGDQASIVGGAINFVKELE 173
                          79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-17120191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.43E-14120177No hitNo description
Gene3DG3DSA:4.10.280.102.1E-14120177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.396121172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-11122173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10127178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MALEAVVLSQ SQQQGSSRRF GCGAMAGGPW SGLFWGAEGA AELSGAGAGT WDAAACSSSM  60
LLREFQEPAG SIAAAAVPPV ESGASVGQEE ATAVAPAPPA PVARRKRRRT RAVKNKEAAE  120
SQRMTHIAVE RNRRKQMNEY LAVLRSLMPA ANAQRGDQAS IVGGAINFVK ELEQLLQSLE  180
ARRRQRSAQH PVTGVGGDVA APFAGFFTFP QYSMRTAAAA PEHAPADATT HRDGAAEAED  240
ASGSKPSAVA DVEATMVESY ANLRVLSRRR PRQLLRLVVG LQGHRLTVLH LNMSSAGQMV  300
LYSFSLKVED DCQLTSVDEI AAATYQIVEK IDQEQGCSLE QHQA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104108RKRRR
2104109RKRRRT
3122133RMTHIAVERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG403800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0560411e-110BT056041.1 Zea mays full-length cDNA clone ZM_BFc0157N10 mRNA, complete cds.
GenBankEU9519701e-110EU951970.1 Zea mays clone 1064081 DNA binding protein mRNA, complete cds.
GenBankKJ7280351e-110KJ728035.1 Zea mays clone pUT6179 bHLH transcription factor (bHLH105) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803750.10.0transcription factor bHLH94-like
SwissprotQ9C7T46e-69BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2S3H0E00.0A0A2S3H0E0_9POAL; Uncharacterized protein
STRINGPavir.Ba01963.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.14e-54bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]