PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG398500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 427aa    MW: 44568.7 Da    PI: 6.6043
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG398500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.1e-09254302355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Pavir.2NG398500.1.p 254 NSHSLAERLRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 302
                          58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.15E-17249319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.89E-11249306No hitNo description
PROSITE profilePS5088815.65251301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16252318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-7254302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-11257307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MEGNASSAGA GIPVEWQTQF SAAAFACPPA QQQQGHMMDS AFASAGLWAS TSQTMALSDV  60
GGAMSAARGG GGGFLAPVPG FLPQGLGHFP VDSGFIERAA RASCFGGGAG GGVMCAGFGA  120
ADQNMNSAFS GSSEALLDHQ RKDGNEKGEP ELGRNGHDAV PSSEAAGGDC SSKGTSDSKK  180
RRRPNEVMGG DQVQSSNLPA DSANESVHSK DKGEESSPAT TTGGKSKGKG TKETSESQKE  240
DYIHVRARRG QATNSHSLAE RLRREKISER MKLLQDLVPG CSKVTGKAVM LDEIINYVQS  300
LQRQVEFLSM KLATVNPRLD LNIEGLLSKD LLRFPGVPSS SLGFSPEMMH PQLQLSQPGL  360
IQGGAAGMAN PDVFRRIIQA QLSAKDGSQM PHALNGSFSD VAQMGYPSPL GPQDLSIRPS  420
QDGFQM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.191531e-133root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG398500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7267900.0KJ726790.1 Zea mays clone pUT2275 bHLH transcription factor (bHLH86) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800986.10.0transcription factor bHLH49-like isoform X2
TrEMBLA0A2S3H0H10.0A0A2S3H0H1_9POAL; Uncharacterized protein
STRINGPavir.Ba01777.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29093785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.37e-55bHLH family protein