PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG397800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 525aa    MW: 56077.4 Da    PI: 8.2439
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG397800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.68.1e-17242291255
                          HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r +h++ E+rRR++iN++f  LrellP++    ++K +Ka+ L +++eYI+ Lq
  Pavir.2NG397800.1.p 242 RSKHSATEQRRRSKINDRFRILRELLPHS----DQKRDKATFLLEVIEYIRFLQ 291
                          889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.1E-23238310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.24E-18239308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.806240290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.69E-16242295No hitNo description
PfamPF000103.3E-14242291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-12246296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MGIQGNKAAT HEHDFLSLYT AAANYKDAPL QLHDSKPPPP SQGSNFFLKT HDFLQPLEKP  60
GAPPPEPSPA LPAAAPGAES RHRHPQVAAA AASRQQALPL PGGVGTFSIC PAPVSVAPAA  120
AAVVKAEPPL VLWGQPAAAL QPAARGRQQQ WALPFAGAGQ PRPPPPRQKQ QQALQDRTGR  180
GGGAGVMESG SRSSGGAGFD DDDGLAARRE VSSSLKDFTV RVDRKGGSCS DGGTDPQPNT  240
PRSKHSATEQ RRRSKINDRF RILRELLPHS DQKRDKATFL LEVIEYIRFL QEKVQKYEAT  300
FPEWNQENAK TLPWSNMYFR SFWKNAQSKG QLPGDSLPDT SHFLRNGSSP GSNFTGRLDD  360
NHNMVTSAAA SGAQDQTETD HMASVCYRSA ETPAIITNNA LSQSQPQWAG LSPMDDCAVN  420
SQMLNNQQLA IDEGTIGVSS QYSQELLNSL THALQSSGVD LSQASISVQI NLGKRAVKRP  480
AAGVPSKEPT DPVSSDEIGQ QLAMLGGGAE DLSHAAKRHK LCNS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.101121e-165leaf| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG397800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801932.10.0transcription factor BIM2-like isoform X12
TrEMBLA0A2S3H0N90.0A0A2S3H0N9_9POAL; Uncharacterized protein
STRINGGRMZM2G089501_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.18e-62BES1-interacting Myc-like protein 2