PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG392300.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 869aa    MW: 91125.8 Da    PI: 6.3635
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG392300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox681.2e-21133188156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +++ +++t++q++eLe++F+++++p++++r eL+k+l+L+ rqVk+WFqNrR+++k
  Pavir.2NG392300.2.p 133 KKRYHRHTPQQIQELEAVFKECPHPDEKQRMELSKRLNLESRQVKFWFQNRRTQMK 188
                          688999***********************************************999 PP
2START170.88.7e-543515814205
                          HHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS
                START   4 eeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla.... 77 
                          ++a++el+k a+ +ep+W  s+       e +n de+++ f++  +     +  ea r+ gv +  +++lv +l+d + +W+e+++    
  Pavir.2NG392300.2.p 351 LAAMEELMKVAQMDEPLWLPSAdggggglETLNFDEYRRAFARVLGpspagYVAEATREAGVAITSSVDLVDSLMDAA-RWSEMFPciva 439
                          789**************************************886669*******************************.*********** PP

                          EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--........-TTSEE-EESSEEEE CS
                START  78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.......sssvvRaellpSgil 153
                          +a+t++ issg      g +qlm aelq+lsplvp R++vf+R+++q+ +g w++vdvSvd   +p          ++++ ++llp+g+l
  Pavir.2NG392300.2.p 440 RASTTDIISSGmggtrsGSIQLMHAELQVLSPLVPiREVVFLRFCKQHAEGLWAVVDVSVDAVGNPHHhalngggAAGYMGCRLLPTGCL 529
                          *************************************************************9999987777778889************* PP

                          EEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                START 154 iepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                          ++++ ng+skvtwv h++++++ +h+l+r+l++sg+a ga++w+a lqrqc+
  Pavir.2NG392300.2.p 530 VQDMNNGYSKVTWVVHAEYDEAAVHQLYRPLLRSGQALGARRWLASLQRQCQ 581
                          ***************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.43E-22115189IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-23120189IPR009057Homeodomain-like
PROSITE profilePS5007118.107130190IPR001356Homeobox domain
SMARTSM003891.1E-19131194IPR001356Homeobox domain
PfamPF000464.1E-19133188IPR001356Homeobox domain
CDDcd000867.57E-20133190No hitNo description
PROSITE patternPS000270165188IPR017970Homeobox, conserved site
PROSITE profilePS5084841.168339585IPR002913START domain
CDDcd088754.19E-103343581No hitNo description
SuperFamilySSF559612.59E-27343581No hitNo description
SMARTSM002349.6E-42348582IPR002913START domain
PfamPF018521.6E-45351581IPR002913START domain
SuperFamilySSF559615.1E-13678858No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 869 aa     Download sequence    Send to blast
MSFGGMFDGA AGSGVFSYDA GGGGGGGGGG GGGSGAGMHN HGRLIPAPPL PKPGGFGAPG  60
LSLGLQTNMD GGQLGDMSRM GFMGGSGSGS AGEGDSLGRG REDENDSRSG SDNVDGASGD  120
ELDPDNSNPR KKKKRYHRHT PQQIQELEAV FKECPHPDEK QRMELSKRLN LESRQVKFWF  180
QNRRTQMKTH IERHENALLR QENDKLRAEN MTIREAMRNP ICANCGGAAV LGEVSLEEQH  240
LRIENARLKD ELDRVCALAG KFLGRPISSG STMASLPGCS GLELAVGSNG FGLGPLGASA  300
LQPLPDLMGG GLPGPVGSAA MRLPAGIGAL DGAMHGPGDG VDRAVLLELG LAAMEELMKV  360
AQMDEPLWLP SADGGGGGLE TLNFDEYRRA FARVLGPSPA GYVAEATREA GVAITSSVDL  420
VDSLMDAARW SEMFPCIVAR ASTTDIISSG MGGTRSGSIQ LMHAELQVLS PLVPIREVVF  480
LRFCKQHAEG LWAVVDVSVD AVGNPHHHAL NGGGAAGYMG CRLLPTGCLV QDMNNGYSKV  540
TWVVHAEYDE AAVHQLYRPL LRSGQALGAR RWLASLQRQC QYLAILCSNS LPARDHAAIT  600
PVGRRSMLKL AQRMTDNFCA GVCASAAQKW RRLDEWRGGE GGGAAGNGGG GATAGEGEEK  660
ARMMARQSVG APGEAPGVVL SATTSVRLPS TPPQRVFDYL RDEQRRGEWD ILANGEAMQE  720
MDHIAKGQHH GNAVSLLRPN ATSGNQNNML ILQETCTDPS GSLVVYAPVD VQSMHVVMNG  780
GDSAYVSLLP SGFAILPDGH SQPSNAAQGS PGGQSSTAGS LVTVAFQILV NNQPTAKLTV  840
ESVDTVSNLL TCTIQKIKSA LQVSIVTP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129134RKKKKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.180680.0leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG392300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2509850.0AJ250985.1 Zea mays mRNA for OCL3 protein (ocl3 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801167.10.0homeobox-leucine zipper protein ROC6-like
SwissprotQ7Y0V70.0ROC6_ORYSJ; Homeobox-leucine zipper protein ROC6
TrEMBLA0A2T7EUW60.0A0A2T7EUW6_9POAL; Uncharacterized protein
STRINGPavir.Ba01266.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein