PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG390000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 594aa    MW: 61956.8 Da    PI: 10.4537
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG390000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.22.1e-092777446
                         S-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHH CS
      Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqk 46
                         W t E++ll++av+++G+ +W+++a +++         g+t+ +c +r++ 
  Pavir.2NG390000.1.p 27 WGTLEELLLACAVTRHGTASWDSVAMEVQtrsplaarPGLTPHSCHLRFRH 77
                         9999*************************9999999999999999999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.3E-42280IPR009057Homeodomain-like
SMARTSM007170.00332381IPR001005SANT/Myb domain
PfamPF002491.1E-72776IPR001005SANT/Myb domain
CDDcd001674.73E-42778No hitNo description
SuperFamilySSF473703.27E-6246350IPR001487Bromodomain
Gene3DG3DSA:1.20.920.106.1E-6273357IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MANGSDSGDV SPESEAAAAA EKGGEIWGTL EELLLACAVT RHGTASWDSV AMEVQTRSPL  60
AARPGLTPHS CHLRFRHLHR RFSTAGSDGE DDPAASAAEG WVDELRRLRV AELRRDVERC  120
DLSIGTLQSK VKRLREERER SVSGEAKPDE ADGNDRLSGE EPGRSCRESN STDLKPPTHP  180
GRQGGGAKEE EVAKQEASGE SAAASKESSD VRSLASLCRR RRGTGSGKTE EEEDVASAPG  240
PPTARPPPFA ALLDAVAAKL GPVLQRLHEH EGEEAAAYRG TIRRHVDLET VRRRLDTAAG  300
SRGGGGGDDD DHYPAQELYR DLLLLCTNAV VFFPRSAPEH AAAAEARALV TGHASAPAKQ  360
DRAAAPAASP APAGADIVGS LIEKGKPLIV CRKRSSIAKA TAAAKKESAA KAEPEPEPEP  420
AEEEESEDEK KAAAAAVATK DKARGPRTKK GRGGAARNPA GLGRNRAKGA DDDAARTTTN  480
GAKKGAGGAA AAGGSAKKRN AVDFLKRLNQ SPSRKRGSPL GTTRKRSASA AAAAVERKNT  540
TTRKRGAGRK EGTGRGGSRR GGRATGTKRG VGRPLKRGSA PATPPSSKRA KTK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG390000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001354230.10.0uncharacterized protein LOC100277965
RefseqXP_002462574.20.0uncharacterized protein LOC8055879
TrEMBLA0A3L6QU720.0A0A3L6QU72_PANMI; Uncharacterized protein
STRINGPavir.Ba01707.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31812648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.12e-14DNA-binding bromodomain-containing protein