PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG385500.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 406aa    MW: 42410.5 Da    PI: 8.7796
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG385500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH407e-13333378655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++Er RR +i +++ +L+el+P+      k  + a++L +Av+YIk+Lq
  Pavir.2NG385500.2.p 333 SIAERVRRTKISERIRKLQELVPNM----EKQTNTADMLDLAVDYIKDLQ 378
                          689*********************7....467*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.212327377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-16330389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.88E-13331382No hitNo description
Gene3DG3DSA:4.10.280.103.5E-15332386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.1E-13333383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-10333378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MYGSPVPKDL NLPAAQPQPT RTPPQMSSPG LLRYRSAPST LLGEVMCGDH DFHEAAAAGH  60
GPAHAAADNV LARFLAGHHA DIPDCKPPRP AAAAAHFMED AASMATPQQQ QQLMYQSQQQ  120
MAAMEGLYRN VSSGGTEQAV AAGASGGAVL RQSSSPAGFL NHLNMDNGYG SMLRAGMAGG  180
FRNGVVSDAR LKGQLSFSSR QGSVMSQISE VGSEELDGGG SPEAAGSNGA ARGYSGIPGY  240
PMGGASGAWT DEQSPTSSGA KRPRDSGPPP QNGQQQPPPP LAPQLSLPGG TGRNGVGKQS  300
SAETAAIEKF LQFQDAVPCK IRAKRGCATH PRSIAERVRR TKISERIRKL QELVPNMEKQ  360
TNTADMLDLA VDYIKDLQKQ VKVLNDGRAS CTCSAGKLLQ NQFAS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG385500.2.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0836840.0BT083684.2 Zea mays full-length cDNA clone ZM_BFb0028K22 mRNA, complete cds.
GenBankEU9699620.0EU969962.1 Zea mays clone 337883 helix-loop-helix DNA-binding domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803424.10.0transcription factor bHLH130-like
RefseqXP_025803426.10.0transcription factor bHLH130-like
TrEMBLA0A2S3H1710.0A0A2S3H171_9POAL; Uncharacterized protein
STRINGPavir.J00377.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.18e-50bHLH family protein