PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2NG385500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 525aa MW: 55249.3 Da PI: 9.6199 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.5 | 9.9e-13 | 333 | 378 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L+el+P+ k + a++L +Av+YIk+Lq Pavir.2NG385500.1.p 333 SIAERVRRTKISERIRKLQELVPNM----EKQTNTADMLDLAVDYIKDLQ 378 689*********************7....467*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.212 | 327 | 377 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.49E-15 | 330 | 386 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.96E-13 | 331 | 382 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 9.8E-15 | 332 | 385 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.0E-9 | 333 | 378 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.3E-13 | 333 | 383 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 525 aa Download sequence Send to blast |
MYGSPVPKDL NLPAAQPQPT RTPPQMSSPG LLRYRSAPST LLGEVMCGDH DFHEAAAAGH 60 GPAHAAADNV LARFLAGHHA DIPDCKPPRP AAAAAHFMED AASMATPQQQ QQLMYQSQQQ 120 MAAMEGLYRN VSSGGTEQAV AAGASGGAVL RQSSSPAGFL NHLNMDNGYG SMLRAGMAGG 180 FRNGVVSDAR LKGQLSFSSR QGSVMSQISE VGSEELDGGG SPEAAGSNGA ARGYSGIPGY 240 PMGGASGAWT DEQSPTSSGA KRPRDSGPPP QNGQQQPPPP LAPQLSLPGG TGRNGVGKQS 300 SAETAAIEKF LQFQDAVPCK IRAKRGCATH PRSIAERVRR TKISERIRKL QELVPNMEKQ 360 TNTADMLDLA VDYIKDLQKQ VKDASVEQIC PLVDGRGNFD EAYPTAPPET KSIQAVFLLP 420 VGISILNWFI KRHCSSEFRF AHGGLSFVPG AERRPRQLHL LRRQAAAEPV RQLKQPPPLT 480 ARCGAARPQG LAGGEASAPA PAARSSSFGP SPTGVLLVSV YVRR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2NG385500.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT083684 | 0.0 | BT083684.2 Zea mays full-length cDNA clone ZM_BFb0028K22 mRNA, complete cds. | |||
GenBank | EU969962 | 0.0 | EU969962.1 Zea mays clone 337883 helix-loop-helix DNA-binding domain containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025803424.1 | 0.0 | transcription factor bHLH130-like | ||||
Refseq | XP_025803426.1 | 0.0 | transcription factor bHLH130-like | ||||
TrEMBL | A0A3L6QQS3 | 0.0 | A0A3L6QQS3_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Ba01718.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1884 | 38 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 2e-41 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2NG385500.1.p |