PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2NG380900.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NF-YC | ||||||||
Protein Properties | Length: 141aa MW: 15427.6 Da PI: 5.2474 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 165.7 | 6.1e-52 | 1 | 101 | 4 | 101 |
NF-YC 4 sfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 +fw++q ie +tdfknh+lPlarikki+kadedv+mi+aeaPv++++ace+filelt r w haeenkrrtl+ksdiaaa++rt++fd Pavir.2NG380900.3.p 1 MFWAEQyreIEATTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHRGWAHAEENKRRTLQKSDIAAAIARTEVFD 90 69**999999******************************************************************************** PP NF-YC 91 flvdivprdel 101 flvdivprd+ Pavir.2NG380900.3.p 91 FLVDIVPRDDA 101 ********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 4.19E-30 | 8 | 92 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.6E-21 | 20 | 83 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 4.4E-37 | 21 | 98 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
MFWAEQYREI EATTDFKNHN LPLARIKKIM KADEDVRMIA AEAPVVFARA CEMFILELTH 60 RGWAHAEENK RRTLQKSDIA AAIARTEVFD FLVDIVPRDD AKDADAAAAA AAAAAAAGIP 120 RPAAGVPATD PLAYYYVPQQ * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-55 | 6 | 98 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 70 | 76 | RRTLQKS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2NG380900.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP100449 | 0.0 | FP100449.1 Phyllostachys edulis cDNA clone: bphyst023f20, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002460424.1 | 4e-97 | nuclear transcription factor Y subunit C-6 | ||||
Refseq | XP_025801912.1 | 3e-97 | nuclear transcription factor Y subunit C-6-like | ||||
Swissprot | Q9XE33 | 1e-76 | NFYC6_ORYSJ; Nuclear transcription factor Y subunit C-6 | ||||
TrEMBL | A0A0E0ETA1 | 1e-95 | A0A0E0ETA1_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0ILC5 | 1e-95 | A0A0E0ILC5_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A2S3H0Q8 | 7e-96 | A0A2S3H0Q8_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7ETQ0 | 7e-96 | A0A2T7ETQ0_9POAL; Uncharacterized protein | ||||
TrEMBL | C5X3S1 | 8e-96 | C5X3S1_SORBI; Uncharacterized protein | ||||
STRING | Pavir.Ba01576.1.p | 1e-96 | (Panicum virgatum) | ||||
STRING | Sb02g027870.1 | 1e-96 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 5e-58 | nuclear factor Y, subunit C2 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2NG380900.3.p |
Publications ? help Back to Top | |||
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