PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG380900.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YC
Protein Properties Length: 141aa    MW: 15427.6 Da    PI: 5.2474
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG380900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC165.76.1e-5211014101
                NF-YC   4 sfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 
                          +fw++q   ie +tdfknh+lPlarikki+kadedv+mi+aeaPv++++ace+filelt r w haeenkrrtl+ksdiaaa++rt++fd
  Pavir.2NG380900.2.p   1 MFWAEQyreIEATTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHRGWAHAEENKRRTLQKSDIAAAIARTEVFD 90 
                          69**999999******************************************************************************** PP

                NF-YC  91 flvdivprdel 101
                          flvdivprd+ 
  Pavir.2NG380900.2.p  91 FLVDIVPRDDA 101
                          ********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.19E-30892IPR009072Histone-fold
PfamPF008081.6E-212083IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.104.4E-372198IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MFWAEQYREI EATTDFKNHN LPLARIKKIM KADEDVRMIA AEAPVVFARA CEMFILELTH  60
RGWAHAEENK RRTLQKSDIA AAIARTEVFD FLVDIVPRDD AKDADAAAAA AAAAAAAGIP  120
RPAAGVPATD PLAYYYVPQQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-55698395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17076RRTLQKS
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG380900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1004490.0FP100449.1 Phyllostachys edulis cDNA clone: bphyst023f20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460424.14e-97nuclear transcription factor Y subunit C-6
RefseqXP_025801912.13e-97nuclear transcription factor Y subunit C-6-like
SwissprotQ9XE331e-76NFYC6_ORYSJ; Nuclear transcription factor Y subunit C-6
TrEMBLA0A0E0ETA11e-95A0A0E0ETA1_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0ILC51e-95A0A0E0ILC5_ORYNI; Uncharacterized protein
TrEMBLA0A2S3H0Q87e-96A0A2S3H0Q8_9POAL; Uncharacterized protein
TrEMBLA0A2T7ETQ07e-96A0A2T7ETQ0_9POAL; Uncharacterized protein
TrEMBLC5X3S18e-96C5X3S1_SORBI; Uncharacterized protein
STRINGPavir.Ba01576.1.p1e-96(Panicum virgatum)
STRINGSb02g027870.11e-96(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.25e-58nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]