PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG375700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 376aa    MW: 39454.7 Da    PI: 8.0372
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG375700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM652.2e-20101462128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratk..sgyWk 84 
                          pp f  hP+d  lv+ yL++ v++   ++  +++ +d+y +eP +L +      ++ +e+ wyf s+ ++k+++g+rk r+++  +g W+
  Pavir.2NG375700.1.p  10 PPAFDSHPSDVVLVKSYLRPWVAQGVRPAGAFVHAADLYAAEPGELARrfraaVARDGERAWYFLSPLRTKSPRGRRKARTVAggAGWWH 99 
                          789999********************999788**************85355544444788********************66534788** PP

                  NAM  85 atgkdkevlsk..kgelvglkktLvfy.kgrapkgektdWvmheyrl 128
                               ++vl+   +++ vg ++++ f  +g +  +++t W+m e rl
  Pavir.2NG375700.1.p 100 GEAGPRPVLDPldGRRMVGYRQSFSFMrRGADGAPVRTGWIMLELRL 146
                          *********99988999**********567888899*******9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-297173IPR003441NAC domain
PROSITE profilePS5100533.5329173IPR003441NAC domain
PfamPF023657.2E-1210146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MLRPTKFHAP PAFDSHPSDV VLVKSYLRPW VAQGVRPAGA FVHAADLYAA EPGELARRFR  60
AAVARDGERA WYFLSPLRTK SPRGRRKART VAGGAGWWHG EAGPRPVLDP LDGRRMVGYR  120
QSFSFMRRGA DGAPVRTGWI MLELRLHDDD GGDGAGGIGD QLEGLVLCKV YRSPRHPGHA  180
DGDDLDESCA AAPAGRHSNV AEDDGSSDSP AAPPGGKRKA GDDGEPSAAT PRRHIRTADD  240
ETSGAAAPTV LGPKEKTADD GNETSGATTA AARGDEGGKK AADDEDSSAS TPPRKRAKTA  300
DDEGAKRMAG APATQQLHCP QCGFHLGVLQ AVVSPAKSTS ETKTGIGQAD ETQGGGRTGD  360
LPAKDLLRFR DPKQA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-11617112166Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1292298PRKRAKT
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG375700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800219.10.0NAC domain-containing protein 68-like
TrEMBLA0A3L6QN700.0A0A3L6QN70_PANMI; Uncharacterized protein
STRINGPavir.J38743.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1966278
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.19e-13NAC domain containing protein 2