PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2NG372000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 716aa MW: 78114.9 Da PI: 4.4818 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 146.9 | 1e-45 | 10 | 136 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 ppGfrF+Ptdeelv ++Lk+++ + + + +++vd+yk++P++Lp+ ++++++++w+fFs+ d+ky++g+r++r+t +gyWkatgkd Pavir.2NG372000.1.p 10 PPGFRFSPTDEELVLYFLKRRIVSGRPSP--YVADVDVYKSHPSHLPErsALQTGDRQWFFFSRMDRKYPNGSRASRTTGDGYWKATGKD 97 8********************88888555..69*************94357888999********************************* PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++ +g++vg kktLv+++grap+ge+tdWvmhey+l Pavir.2NG372000.1.p 98 RFICGGGGRAVGNKKTLVYHHGRAPRGERTDWVMHEYTL 136 *************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.97E-52 | 7 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.807 | 9 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.0E-24 | 10 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070301 | Biological Process | cellular response to hydrogen peroxide | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005789 | Cellular Component | endoplasmic reticulum membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 716 aa Download sequence Send to blast |
MEAPPPRRWP PGFRFSPTDE ELVLYFLKRR IVSGRPSPYV ADVDVYKSHP SHLPERSALQ 60 TGDRQWFFFS RMDRKYPNGS RASRTTGDGY WKATGKDRFI CGGGGRAVGN KKTLVYHHGR 120 APRGERTDWV MHEYTLLADA LPPAAQGRES YALYKLFQKS GAGPKNGEQY GAPFREEDWL 180 DDEEGVIAVA PASPVPNNNN CPATVEEHEI ADRELPVEDL DELLSQIGND KEEFGEAQLD 240 FSTPATSHGQ SQGWLSEGGN KAEVVDASIS SGAGVAAENT CTGGLPLGDI EQLLMQMSDD 300 QQNAELFSDL STSVPQLQLQ CDDHQVWLDA HREQEVCAPD PTTSSGVVVT AECTDTEFGD 360 LEGLLLQIAN DQDMIEPQSD LSGPIPYHNF NQVGIGDFHE SHGALVGNLS CIVQESTFDP 420 QTEPRSQFPQ SSLTNVPFSG ETNSSEGTSV PRSVSGLISY NSQDADEEFL EINDFFDLEG 480 VEQSANCTAT EHLISATNGM FDNLEYSDAH TFLPGPFDTV GVVAENQFFD YGNTGIQDQG 540 YQYTTEVTTH NQAALNVRSH MKHTHVVLPS HASGTLNLHA ANEPPNRSST ASQSWFNAAL 600 SALLDSVPSS PALAAEIENT VINKTLQRIS SFRSHQASGE DNTVINRTLH RISSFRSQQV 660 ASEQPSTPTI QVTRGGRLMF LSLLVILAAV MWTFTAGSAG SALNFCKGLW KSSSR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-42 | 10 | 136 | 16 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.12529 | 0.0 | callus| root |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00179 | DAP | Transfer from AT1G34190 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2NG372000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025802095.1 | 0.0 | NAC domain-containing protein 82-like | ||||
TrEMBL | A0A2T7EU37 | 0.0 | A0A2T7EU37_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J04800.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9128 | 28 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34190.1 | 7e-66 | NAC domain containing protein 17 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2NG372000.1.p |