PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG355000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HSF
Protein Properties Length: 302aa    MW: 32717.6 Da    PI: 8.9003
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG355000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.71.5e-32271192103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+++++e+++++e+isw e+g+sfvv+++ ++a+++Lp +Fkh nf+SFvRQLn+YgF+kv  ++         weF++++F++g++
  Pavir.2NG355000.1.p  27 FLTKTHQMVEEASTDEVISWAEQGRSFVVWKPVDLARDLLPLHFKHCNFSSFVRQLNTYGFRKVVPDR---------WEFANDNFRRGEQ 107
                          9*****************************************************************99.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                           ll+ i+r+ks+
  Pavir.2NG355000.1.p 108 ALLSGIRRRKST 119
                          *********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.9E-3518110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.1E-5323116IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.48E-3123116IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.0E-2827116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-172750IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-176577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-177890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MESEAEAAAA GQPASSRQRA AGGPAPFLTK THQMVEEAST DEVISWAEQG RSFVVWKPVD  60
LARDLLPLHF KHCNFSSFVR QLNTYGFRKV VPDRWEFAND NFRRGEQALL SGIRRRKSTT  120
PQPSKSGGGS AVVNVAFPPP LPPASGTTSG GGNERSSSSA SSPPLADLTS ENEQLKKDNR  180
TLATELAQAR RQCEELLGFL SRFLDVRQLD LGLLMQEDVR AAAGDAHHHH QQRRAAADPL  240
ERGGEEGKSV KLFGVLLQDA ARKRGRCEEA AATERPIKMI RVGEPWVGVP SSGLGRFGGE  300
N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B5e-20271205109Heat shock factor protein 2
5d8l_B5e-20271205109Heat shock factor protein 2
5d8l_D5e-20271205109Heat shock factor protein 2
5d8l_F5e-20271205109Heat shock factor protein 2
5d8l_H5e-20271205109Heat shock factor protein 2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.113210.0stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG355000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277540.0KJ727754.1 Zea mays clone pUT5697 HSF transcription factor (HSF21) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802216.11e-179heat stress transcription factor B-1-like isoform X1
SwissprotQ67TP91e-127HSFB1_ORYSJ; Heat stress transcription factor B-1
TrEMBLA0A2S3H0631e-178A0A2S3H063_9POAL; Uncharacterized protein
TrEMBLA0A2T7ET391e-178A0A2T7ET39_9POAL; Uncharacterized protein
STRINGPavir.Ba02028.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.11e-57heat shock factor 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Grand X, et al.
    Identification of positive and negative regulators of disease resistance to rice blast fungus using constitutive gene expression patterns.
    Plant Biotechnol. J., 2012. 10(7): p. 840-50
    [PMID:22607456]