PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG348500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 343aa    MW: 35633.7 Da    PI: 6.6693
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG348500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.31.1e-17165219256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rk+ +++keq   Lee F+++ +++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Pavir.2NG348500.1.p 165 RKKLRLSKEQSAFLEESFKEHATLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 219
                          788899***********************************************98 PP
2HD-ZIP_I/II126.51.1e-40165255192
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rlskeq+++LEesF+e+ +L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +
  Pavir.2NG348500.1.p 165 RKKLRLSKEQSAFLEESFKEHATLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELR-A 253
                          69*************************************************************************************9.5 PP

          HD-ZIP_I/II  91 lk 92 
                          lk
  Pavir.2NG348500.1.p 254 LK 255
                          55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-17150215IPR009057Homeodomain-like
SuperFamilySSF466892.44E-18154222IPR009057Homeodomain-like
PROSITE profilePS5007116.989161221IPR001356Homeobox domain
SMARTSM003891.0E-15163225IPR001356Homeobox domain
PfamPF000463.9E-15165219IPR001356Homeobox domain
CDDcd000862.48E-16165222No hitNo description
PROSITE patternPS000270196219IPR017970Homeobox, conserved site
SMARTSM003401.4E-24221264IPR003106Leucine zipper, homeobox-associated
PfamPF021831.3E-10221255IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MELGLSLGET MADAGRDLVL GLGMGAGARR DEEAEPGRRE LEFGAGRCGR PSPEPAVRLT  60
LLPALGLPWP PPSGATRHLE ASTCGFDVNR APSMSAAGAA AEDDDEQDDA GAAGAGASSS  120
PNNSAGSFPT DFSAHGQAGP RGGGGSGADR AGSRASDEDD GGSARKKLRL SKEQSAFLEE  180
SFKEHATLNP KQKLALAKQL NLRPRQVEVW FQNRRARTKL KQTEVDCEYL KRCCETLTEE  240
NRRLQKELAE LRALKTVHPF YMHLPATTLS MCPSCERVAS SSAPAPAAAA PAQAASSSPA  300
PAGGGIAAAP PEQRPSSFSA LFSSPLSRPL AAQPQPQAPA SS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213221RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.249841e-154root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG348500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802237.11e-163homeobox-leucine zipper protein HOX11-like
SwissprotQ67UE21e-145HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11
TrEMBLA0A1E5V7401e-164A0A1E5V740_9POAL; Homeobox-leucine zipper protein HOX11
STRINGPavir.J20342.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52093363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.14e-60homeobox from Arabidopsis thaliana