PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.2NG330800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 449aa MW: 49049.3 Da PI: 6.845 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.2 | 1.4e-18 | 241 | 296 | 2 | 56 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+++++t+eq++eLe Fe+ +r++ e++ eLA++lg+ rqV vWFqNrRa++k Pavir.2NG330800.1.p 241 RTKRRLTAEQVRELELSFEEeKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWK 296 77889**************98**********************************9 PP | |||||||
2 | HD-ZIP_I/II | 116.3 | 1.8e-37 | 242 | 333 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 krrl++eqv+ LE sFeee+ kLeperK+elar+Lg+ prqvavWFqnrRAR+k+kqlE+d+++L++a+d+l + +++L +++++Lr++ Pavir.2NG330800.1.p 242 TKRRLTAEQVRELELSFEEEKrKLEPERKSELARRLGIAPRQVAVWFQNRRARWKAKQLEQDFNRLRAAHDELLAGRDALLADNDRLRSQ 331 69****************9999******************************************************************99 PP HD-ZIP_I/II 91 lk 92 + Pavir.2NG330800.1.p 332 VI 333 86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.75E-17 | 232 | 300 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.767 | 237 | 298 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.7E-16 | 239 | 302 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.25E-14 | 241 | 299 | No hit | No description |
Pfam | PF00046 | 8.4E-16 | 241 | 296 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-18 | 247 | 297 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 6.1E-6 | 269 | 278 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 273 | 296 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 6.1E-6 | 278 | 294 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 5.2E-13 | 298 | 340 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 449 aa Download sequence Send to blast |
MNLTNPKGYF CHYAPRGHAL QMPFAPINSI LLQASEFTRF PHQFPPLKTT PLLPVLIPLG 60 LRLIKLVDDT AGQLLRPLRV SSHKTCGGEA CALPRRRRHG VHAVPHQVVN ARAVEHQLLP 120 PQVPGHRDLL LIRLAPAAGD TSVFLEEVEE RTYVHRFTSV APFRAAGEGG GQVFLFGGGG 180 GGGFLRSAPV VGAAGAADGW RRRKRPFQLT AAHEELQLQL ELGDDELAGF DYELHGGPQE 240 RTKRRLTAEQ VRELELSFEE EKRKLEPERK SELARRLGIA PRQVAVWFQN RRARWKAKQL 300 EQDFNRLRAA HDELLAGRDA LLADNDRLRS QVITLTDKLQ AKESSVPATA LKAATYASFE 360 QDQLCTETAT TAGAAPAAGY TGGAGDSPES YLAGARSPPS SSEDDCGGGD GDDGAFFLPN 420 PDMLLAAAAE EDGAQLSNWA WLWNEQQY* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 290 | 298 | RRARWKAKQ |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.2NG330800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK356850 | 1e-103 | AK356850.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1041A16. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025804293.1 | 1e-131 | homeobox-leucine zipper protein HOX25-like | ||||
Swissprot | A3BYC1 | 5e-73 | HOX25_ORYSJ; Homeobox-leucine zipper protein HOX25 | ||||
TrEMBL | A0A2T8KQ94 | 1e-130 | A0A2T8KQ94_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J04192.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12756 | 27 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G01470.1 | 2e-29 | homeobox 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.2NG330800.1.p |