PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.2NG320400.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

TCP

Protein Properties

Length: 265aa MW: 28385.2 Da PI: 6.7062

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2NG320400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	113	4.2e-35	100	178	3	83
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssas 83 ++drhski T++g RdRR+Rls+++a+ fF+Lqd+LGfdk+skt++WLl+q+kpai+ lt+ s+++c + s+ Pavir.2NG320400.1.p 100 FRTDRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIDRLTEP---SHQRCvggG--DAALSSP 178 689**********************************************************99...444555331..2222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	34.922	101	159	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.2E-33	101	168	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MLPYPNSHHF GVSHSQKQQP HPNPTGFPMM PPAAHLDQHY ADHHFFPGHG QFNSETLEAV 60 LRPPRAAPES GPAVTAPPQG GRNGAAAAGQ GHARARNRPF RTDRHSKIRT AQGVRDRRMR 120 LSLDVARDFF ALQDRLGFDK ASKTVDWLLT QSKPAIDRLT EPSHQRCVGG GDAALSSPTS 180 GAPNGSGNKS SRGGVVEKAG TRNGGSAAFL EHGCELDRLV SAAPALGEYY YAGLSEMMSN 240 NGGEGDDEGE YEEDGDDFLD GMQY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2NG320400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025804518.1	1e-156	transcription factor TB1-like
TrEMBL	A0A3L6PDF5	1e-155	A0A3L6PDF5_PANMI; Uncharacterized protein
STRING	Pavir.Ba01820.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4052	31	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18550.1	7e-30	TCP family protein

Link Out ? help Back to Top
Phytozome	Pavir.2NG320400.1.p