PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2NG320300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 352aa MW: 36358.8 Da PI: 6.9986 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.9 | 2.1e-14 | 122 | 168 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+ErrRR+riN f++Lr+llP+ +K +Ka+ L ++ +++k+L Pavir.2NG320300.1.p 122 RSHSEAERRRRQRINGHFARLRSLLPNT-----TKTDKASLLAEVLDHVKEL 168 78*************************9.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.882 | 119 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.91E-14 | 122 | 171 | No hit | No description |
Pfam | PF00010 | 7.8E-12 | 122 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.76E-15 | 123 | 175 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.5E-14 | 123 | 175 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.6E-14 | 125 | 174 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF55021 | 3.84E-5 | 223 | 273 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 9.0E-6 | 223 | 271 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MMWDGGVEHG SQEAAHQLLP WLGSAAFGEP AVAGFGAMGA AYGACDGVSV GGGLQGLGLA 60 HGGVFGFGFD AVQPPPQQRA AGGAAEGSGK AVVSGLLGSL QAELGRMTAR EMMDAKALAA 120 SRSHSEAERR RRQRINGHFA RLRSLLPNTT KTDKASLLAE VLDHVKELKR QTSAMMVAAA 180 AAVAGGGDDE GAAGPAQMLP TEADELAVDA AADRAGRLVV RASLCCEDRP DLIPDIVRAL 240 AALRMRARRA EITTLGGRVR SVLLITADEG AEDDDQGYDD DGGRCPNARQ RGGGGGHGRA 300 ASHRRHECIA SVQEALRGVM DRRTASSDTS SSGGGGIKRQ RMNYGVQEQC V* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2NG320300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU971189 | 0.0 | EU971189.1 Zea mays clone 359116 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025803043.1 | 1e-150 | transcription factor bHLH30-like | ||||
TrEMBL | A0A3L6QKW9 | 1e-159 | A0A3L6QKW9_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Ba01821.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1918 | 38 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 5e-35 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2NG320300.1.p |