PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG318300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 317aa    MW: 34873.6 Da    PI: 5.8294
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG318300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.21e-1457104148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g+WT eEd++lv      G  +W+++++  g+ R++k+c++rw +yl
  Pavir.2NG318300.1.p  57 KGPWTVEEDQKLVSFLLNNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 104
                          79******************************99************97 PP
2Myb_DNA-binding551.9e-17113154447
                          S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           ++eE++  +d++++lG++ W++Ia++++ gRt++++k++w+++
  Pavir.2NG318300.1.p 113 LSAEEEKTVIDLHAELGNR-WSKIASHLP-GRTDNEIKNHWNTH 154
                          589****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-1948105IPR009057Homeodomain-like
PROSITE profilePS5129413.78952104IPR017930Myb domain
SuperFamilySSF466891.31E-2654151IPR009057Homeodomain-like
SMARTSM007174.5E-1156106IPR001005SANT/Myb domain
PfamPF002491.7E-1357104IPR001005SANT/Myb domain
CDDcd001671.31E-759104No hitNo description
PROSITE profilePS5129427.114105159IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-25106159IPR009057Homeodomain-like
SMARTSM007175.6E-16109157IPR001005SANT/Myb domain
PfamPF002491.3E-15113154IPR001005SANT/Myb domain
CDDcd001673.98E-12114155No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MACPPWNWLL LAWYFPHQAP RAPIPVHLHK RTRCYSLQLA ELEMGRQPCC DKVGLKKGPW  60
TVEEDQKLVS FLLNNGQCCW RAVPKLAGLL RCGKSCRLRW TNYLRPDLKR GLLSAEEEKT  120
VIDLHAELGN RWSKIASHLP GRTDNEIKNH WNTHIKKKLR KMGIDPVTHK PLQPALSAPP  180
QAEEEDKVAA AAAVSSEGVR NEAFSLSEVP MVDLLDDVVL PPCDLVAGAP PASNSGIDTA  240
CSPDQSSSSS SSPYSGSAAA SSCGSSVADG ECPEWLEWAE SMLLDDDAVT GPAPWAFEDP  300
FVTYQRIVLF DHQEAW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-28551595108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG318300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0837351e-151BT083735.2 Zea mays full-length cDNA clone ZM_BFb0033K01 mRNA, complete cds.
GenBankBT0855211e-151BT085521.2 Zea mays full-length cDNA clone ZM_BFc0028P12 mRNA, complete cds.
GenBankBT0856251e-151BT085625.2 Zea mays full-length cDNA clone ZM_BFc0040A03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802265.11e-140protein ODORANT1-like
TrEMBLA0A2T7ES381e-139A0A2T7ES38_9POAL; Uncharacterized protein
STRINGPavir.Ba02150.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.14e-83myb domain protein 20