PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG318000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 364aa    MW: 39421.6 Da    PI: 6.5093
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG318000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.31.7e-1399146148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g+WT+eEd++lv      G  +W+++++  g+ R++k+c++rw +yl
  Pavir.2NG318000.1.p  99 KGPWTAEEDQKLVSFLLNNGLFCWRAVPKLAGLLRCGKSCRLRWTNYL 146
                          79******************99**********99************97 PP
2Myb_DNA-binding56.85.2e-18153196247
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          g  ++eE+e  +d++++lG++ W++Ia++++ gRt++++k++w+++
  Pavir.2NG318000.1.p 153 GMLSEEEEETVIDLHAELGNR-WSKIASHLP-GRTDNEIKNHWNTH 196
                          5569*****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.43294146IPR017930Myb domain
SuperFamilySSF466895.24E-2796193IPR009057Homeodomain-like
SMARTSM007171.8E-1098148IPR001005SANT/Myb domain
PfamPF002493.2E-1299146IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.5E-19100153IPR009057Homeodomain-like
PROSITE profilePS5129427.817147201IPR017930Myb domain
SMARTSM007171.2E-15151199IPR001005SANT/Myb domain
PfamPF002494.5E-16153196IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-25154201IPR009057Homeodomain-like
CDDcd001672.64E-13156197No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MKGIKKKLSS NKRAKASQWH SSPCKASDRD QGAVACPSGS IVVGPKNPAS AFSGDARVPS  60
PGGVPLVVFF TVVLYKGGKV AMASPARSWA LACLVGLKKG PWTAEEDQKL VSFLLNNGLF  120
CWRAVPKLAG LLRCGKSCRL RWTNYLRPDL KRGMLSEEEE ETVIDLHAEL GNRWSKIASH  180
LPGRTDNEIK NHWNTHIKKK LRKMGIDPAT HKPLQPAPPP AGSPEEEEIV TAVTPGHEAF  240
CTDDVPMAHL LDDIVFSGDV AGAQPAPSDG VTTAYSPDQS PSAASSSSYS TSAAASSSGS  300
GSVDGDDWPD LPLMMDWPES MWHLEDVVTG RTPWEFEDPF LTYQTIALFD HQETWTNSKI  360
ELF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28972015108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG318000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0837351e-118BT083735.2 Zea mays full-length cDNA clone ZM_BFb0033K01 mRNA, complete cds.
GenBankBT0855211e-118BT085521.2 Zea mays full-length cDNA clone ZM_BFc0028P12 mRNA, complete cds.
GenBankBT0856251e-118BT085625.2 Zea mays full-length cDNA clone ZM_BFc0040A03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802247.11e-162myb-related protein 315-like
RefseqXP_025802248.11e-162myb-related protein 315-like
RefseqXP_025802249.11e-162myb-related protein 315-like
RefseqXP_025802250.11e-162myb-related protein 315-like
RefseqXP_025802251.11e-162myb-related protein 315-like
RefseqXP_025802252.11e-162myb-related protein 315-like
RefseqXP_025802253.11e-162myb-related protein 315-like
RefseqXP_025802254.11e-162myb-related protein 315-like
RefseqXP_025802255.11e-162myb-related protein 315-like
RefseqXP_025802256.11e-162myb-related protein 315-like
RefseqXP_025802257.11e-162myb-related protein 315-like
RefseqXP_025802258.11e-162myb-related protein 315-like
RefseqXP_025802260.11e-162myb-related protein 315-like
RefseqXP_025802261.11e-162myb-related protein 315-like
RefseqXP_025802262.11e-162myb-related protein 315-like
RefseqXP_025802263.11e-162myb-related protein 315-like
TrEMBLA0A2T7ES361e-161A0A2T7ES36_9POAL; Uncharacterized protein
STRINGPavir.Ba02149.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.19e-69myb domain protein 20