PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.2NG236800.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

BES1

Protein Properties

Length: 584aa MW: 65886.1 Da PI: 4.9406

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2NG236800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	119.6	4.3e-37	53	127	6	80
DUF822 6 kptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeae 80 +++++E E++k+RER+RRai+ +i+aGLR++Gny+l++raD+neV++AL+reAGw+v +DGtt++ +s p+ +a+ Pavir.2NG236800.1.p 53 RRRAREEERTKLRERQRRAITGRILAGLRQHGNYCLRARADINEVIAALAREAGWIVLPDGTTFPTSSPPPAAAQ 127 5789*************************************************************9998884444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	5.4E-34	53	126	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	4.09E-191	140	579	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	2.5E-208	143	577	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	3.5E-116	149	567	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	8.5E-78	180	194	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	8.5E-78	201	219	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	8.5E-78	223	244	IPR001554	Glycoside hydrolase, family 14
PROSITE pattern	PS00506	0	227	235	IPR018238	Glycoside hydrolase, family 14, conserved site
PRINTS	PR00842	2.3E-8	306	315	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00750	8.5E-78	316	338	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	8.5E-78	389	408	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	8.5E-78	423	439	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	8.5E-78	440	451	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	8.5E-78	458	481	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00842	2.3E-8	461	471	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00750	8.5E-78	498	520	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00842	2.3E-8	549	563	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00842	2.3E-8	564	578	IPR001371	Glycoside hydrolase, family 14B, plant

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 584 aa Download sequence Send to blast
MQQAEDEDEE MGVKEEDGDE EEEDDGCFYM DPCPVSAASP TGSGGVGRAN PGRRRAREEE 60 RTKLRERQRR AITGRILAGL RQHGNYCLRA RADINEVIAA LAREAGWIVL PDGTTFPTSS 120 PPPAAAQVPD VAPRPPERDF AGTPYVPVYV MLPLGVVNVN GEVVDADELV GQLRVLKAAG 180 VDGVMVDCWW GNVEAHRPQE YNWTGYKRLF QMIRELKLKL QVVMSFHECG GNVGDDVSIP 240 LPHWVTEIGR SNPDIYFTDR AGRRNTECLS WGIDKERVLQ GRTAVEVYFD FMRSFRVEFD 300 EYFEDGIISE IEIGLGACGE LRYPSYPAKH GWKYPGIGEF QCYDRYLQKN LRRAAEARGH 360 TIWARGPGNA GHYNSEPNLT GFFCDGGDYD SYYGRFFLNW YSQMLVDHAD RVLMLARLAF 420 EGSSIAVKVS GVHWWYKTAS HAAELTAGFY NPCNRDGYAP IAAVLKKYDA ALNFTCVELR 480 TMDQHEVYPE AFADPEGLVW QVLNAAWDAG IQVASENALP CYDRDGFNKI LENAKPLNDP 540 DGRHLFGFTY LRLSKVLFER RNFFEFERFV KRMHGEAVLD LQV*

Sequence ? help Back to Top

Protein Sequence Length: 584 aa Download sequence Send to blast

MQQAEDEDEE MGVKEEDGDE EEEDDGCFYM DPCPVSAASP TGSGGVGRAN PGRRRAREEE  60
RTKLRERQRR AITGRILAGL RQHGNYCLRA RADINEVIAA LAREAGWIVL PDGTTFPTSS  120
PPPAAAQVPD VAPRPPERDF AGTPYVPVYV MLPLGVVNVN GEVVDADELV GQLRVLKAAG  180
VDGVMVDCWW GNVEAHRPQE YNWTGYKRLF QMIRELKLKL QVVMSFHECG GNVGDDVSIP  240
LPHWVTEIGR SNPDIYFTDR AGRRNTECLS WGIDKERVLQ GRTAVEVYFD FMRSFRVEFD  300
EYFEDGIISE IEIGLGACGE LRYPSYPAKH GWKYPGIGEF QCYDRYLQKN LRRAAEARGH  360
TIWARGPGNA GHYNSEPNLT GFFCDGGDYD SYYGRFFLNW YSQMLVDHAD RVLMLARLAF  420
EGSSIAVKVS GVHWWYKTAS HAAELTAGFY NPCNRDGYAP IAAVLKKYDA ALNFTCVELR  480
TMDQHEVYPE AFADPEGLVW QVLNAAWDAG IQVASENALP CYDRDGFNKI LENAKPLNDP  540
DGRHLFGFTY LRLSKVLFER RNFFEFERFV KRMHGEAVLD LQV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1bya_A	1e-162	145	576	11	444	BETA-AMYLASE
1byb_A	1e-162	145	576	11	444	BETA-AMYLASE
1byc_A	1e-162	145	576	11	444	BETA-AMYLASE
1byd_A	1e-162	145	576	11	444	BETA-AMYLASE
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.34737	0.0	callus\| leaf\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Low beta-amylase activity. Interacts poorly with starch or other alpha-1,4-glucan. {ECO:0000269\|PubMed:18390594, ECO:0000269\|PubMed:19664588}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2NG236800.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly by cold stress. {ECO:0000269\|PubMed:16297066}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU956905	0.0	EU956905.1 Zea mays clone 1577050 beta-amylase mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002459849.2	0.0	beta-amylase 2, chloroplastic
Swissprot	O65258	0.0	BAM2_ARATH; Beta-amylase 2, chloroplastic
TrEMBL	A0A1W0W3Q2	0.0	A0A1W0W3Q2_SORBI; Beta-amylase
STRING	ORUFI09G21750.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2141	36	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45880.1	0.0	beta-amylase 7

Link Out ? help Back to Top
Phytozome	Pavir.2NG236800.1.p

Publications ? help Back to Top
Smith AM,Zeeman SC,Smith SM Starch degradation. Annu Rev Plant Biol, 2005. 56: p. 73-98 [PMID:15862090] Lundmark M,Cavaco AM,Trevanion S,Hurry V Carbon partitioning and export in transgenic Arabidopsis thaliana with altered capacity for sucrose synthesis grown at low temperature: a role for metabolite transporters. Plant Cell Environ., 2006. 29(9): p. 1703-14 [PMID:16913860] Li J, et al. Catalytically-inactive beta-amylase BAM4 required for starch breakdown in Arabidopsis leaves is a starch-binding-protein. Arch. Biochem. Biophys., 2009. 489(1-2): p. 92-8 [PMID:19664588] Andriotis VM,Pike MJ,Kular B,Rawsthorne S,Smith AM Starch turnover in developing oilseed embryos. New Phytol., 2010. 187(3): p. 791-804 [PMID:20546137] Monroe JD, et al. Arabidopsis β-Amylase2 Is a K+-Requiring, Catalytic Tetramer with Sigmoidal Kinetics. Plant Physiol., 2017. 175(4): p. 1525-1535 [PMID:29066669]