PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2NG231600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 152aa MW: 16949.6 Da PI: 12.5961 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23.8 | 8.3e-08 | 107 | 141 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 RR++iN++++ L++l+P++ + ++L +A+eY+k+Lq Pavir.2NG231600.1.p 107 RRSKINKKMQALQSLIPNS--------N-KTMLDEAIEYLKQLQ 141 ******************8........2.378***********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00353 | 5.8E-5 | 102 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.25E-7 | 107 | 145 | No hit | No description |
Pfam | PF00010 | 4.3E-5 | 107 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-9 | 107 | 149 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.2E-10 | 107 | 149 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MRTPWLLPIS TTGGGGGGGG WRSRRRCGAR CSSGWRRSRR RRWCWATPNR RTTGRRQAGL 60 GTVTRACRSR NRRRRGSTGG PAANGAAPRR CITFTRRCCS LPFLEGRRSK INKKMQALQS 120 LIPNSNKTML DEAIEYLKQL QLQVQASKMS A* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 23 | 41 | RRRCGARCSSGWRRSRRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2NG231600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1D6NUL7 | 4e-28 | A0A1D6NUL7_MAIZE; Transcription factor SPATULA | ||||
STRING | Pavir.Ba03063.1.p | 1e-101 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3336 | 37 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67110.1 | 1e-16 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2NG231600.1.p |