PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG215300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 279aa    MW: 30028.9 Da    PI: 6.7636
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG215300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.72.1e-15171207135
                 GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C+nCg ++  Tp +Rrgp g+++LCnaCGl+++ kg+
  Pavir.2NG215300.1.p 171 CQNCGISSrlTPAMRRGPAGPRSLCNACGLMWANKGT 207
                          **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009792.4E-83873IPR010399Tify domain
PROSITE profilePS5132014.5963873IPR010399Tify domain
PfamPF062002.6E-114072IPR010399Tify domain
PfamPF062031.7E-15100140IPR010402CCT domain
PROSITE profilePS5101713.027100142IPR010402CCT domain
SMARTSM004011.2E-10165219IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.52E-10168220No hitNo description
Gene3DG3DSA:3.30.50.106.4E-14169209IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.46E-14171217No hitNo description
PROSITE patternPS003440171198IPR000679Zinc finger, GATA-type
PfamPF003204.0E-13171207IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MAAEPAADDH DPRPPPADGP AAAGGGDASA SAAAEALMSA ASEQLTMVYQ GDVYVFDPVS  60
PQKVQAVLLV LGGYEVPPDL VNRAVPTAND EKSTTVAARR FASLMRFREK RKERCYDKRI  120
RYNVRKEVAQ KMKRCKGQFA GRSDFGDGAC SSVACGSPAN GEDDHFKETH CQNCGISSRL  180
TPAMRRGPAG PRSLCNACGL MWANKGTLRS PLHAPKMTLQ HPANPSKMGD TDDKILIDLP  240
VEHNQTMVKT DSGMMPEQEQ EQKLDICPPT EEDIKSVS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.424470.0leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG215300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9582860.0EU958286.1 Zea mays clone 1683206 GATA transcription factor 25 mRNA, complete cds.
GenBankKU5128690.0KU512869.1 Zea mays TIFY18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793125.11e-177GATA transcription factor 19-like
SwissprotB8AR301e-133GAT19_ORYSI; GATA transcription factor 19
TrEMBLA0A3L6TR351e-177A0A3L6TR35_PANMI; Uncharacterized protein
STRINGPavir.J00664.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.23e-54ZIM-LIKE 2