PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2NG199800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 266aa MW: 27706.1 Da PI: 6.0647 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.7 | 3.3e-11 | 71 | 117 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h e+E+rRR+ri+s +++Lr +l + +K +Ka+ L kAve +++L Pavir.2NG199800.1.p 71 RNHREAEKRRRERIKSHLDRLRNVLSCD-----PKIDKASLLAKAVERVRDL 117 78***********************997.....7*************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.087 | 68 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.0E-8 | 71 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.37E-12 | 71 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.6E-11 | 72 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.4E-9 | 74 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MFPAAEVSAL AGAAGRQGER GVLPMLPPFF MGSIWPAAAD GAAGAADSEE DEAAAAAAAA 60 AAHDRALAAS RNHREAEKRR RERIKSHLDR LRNVLSCDPK IDKASLLAKA VERVRDLKQR 120 VAGVGEAAPA HLFPTEHDEI VVLASGGGAV FEASVCCDDR SDLLPELIET LRALRLRTLR 180 AEMATLGGRV RNVLVLARDA DGGGVPGDDD GYGGRTDSAD STESNGGGGD FIKEALRALV 240 ERPGAGGGDR PKRRRVSDTN MQAAA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 251 | 255 | KRRRV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2NG199800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727966 | 0.0 | KJ727966.1 Zea mays clone pUT6079 bHLH transcription factor (bHLH48) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004981312.1 | 1e-129 | transcription factor bHLH106-like | ||||
Swissprot | O80674 | 9e-49 | BH106_ARATH; Transcription factor bHLH106 | ||||
TrEMBL | A0A368SD61 | 1e-128 | A0A368SD61_SETIT; Uncharacterized protein | ||||
STRING | Pavir.J02699.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9578 | 30 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41130.1 | 4e-28 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2NG199800.1.p |
Publications ? help Back to Top | |||
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