PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG196300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 351aa    MW: 38058.1 Da    PI: 8.8275
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG196300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.23.7e-33131185155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          kprlrWt +LHerFv+av+qLGG+ekAtPktil++m+vkgLtl h+kSHLQkYRl
  Pavir.2NG196300.1.p 131 KPRLRWTADLHERFVDAVAQLGGPEKATPKTILRTMGVKGLTLFHLKSHLQKYRL 185
                          79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-31128186IPR009057Homeodomain-like
PROSITE profilePS5129411.738128188IPR017930Myb domain
TIGRFAMsTIGR015572.7E-24131186IPR006447Myb domain, plants
SuperFamilySSF466893.4E-16131187IPR009057Homeodomain-like
PfamPF002492.6E-8133184IPR001005SANT/Myb domain
PfamPF143791.4E-20226272IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MRAFQPSAFS HHPPELTIHE GAESGEREES LPVESGSGCR EARTRKKGER ESRGTFSLDP  60
LLLGRKKEKK ALSLLFLLLR RAAGGTEEEE MFPPGLIHHR PDGPAPSDGA PRSGPVGGPG  120
GPSLVLTADP KPRLRWTADL HERFVDAVAQ LGGPEKATPK TILRTMGVKG LTLFHLKSHL  180
QKYRLGKQSG KEGSEQSKDG SYLLDAQTGM SVSPRVPAQD VKESQEVKEA LRAQMEVQRR  240
LHEQVEVQKR VQIRMEALQK YIDSILESAC KMVTEQFASS GFSISDPDLP EISPGGVLCG  300
PTDTLSSSVF NQLSVSSIDS HSPGGRPSPS GIEGPPMLLQ RSPELKRRSS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-19131187258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-19131187258Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A7e-19131187157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-19131187157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-19131187157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-19131187157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-19131187258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-19131187258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-19131187258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-19131187258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-19131187258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-19131187258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.72210.0callus| leaf| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG196300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804279.10.0protein PHR1-LIKE 2-like
SwissprotQ94A575e-71PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBLA0A2T8KPV90.0A0A2T8KPV9_9POAL; Uncharacterized protein
STRINGSi030441m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34273873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.16e-69G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]