PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG193300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 291aa    MW: 32817 Da    PI: 4.8648
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG193300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2292.6e-0978118146
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaa 46 
                          s+y+GVr ++ +grW AeIr p     +k+     ++t+eeAa+a+
  Pavir.2NG193300.1.p  78 SRYRGVRLRE-SGRWQAEIRNPL----TKKREYSLHDTEEEAAAAY 118
                          79*******9.7*********73....344444689********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.71E-1478118No hitNo description
SuperFamilySSF541713.73E-978126IPR016177DNA-binding domain
SMARTSM003804.0E-579142IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-1079126IPR001471AP2/ERF domain
PROSITE profilePS5103212.56379137IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MLRSTKMPPM RKVRILCSDP DATDSSGDED DQNPKTEKKI IGVVLVPVKN CKTSKPQKTS  60
MLSGMKDLDS PERKVSSSRY RGVRLRESGR WQAEIRNPLT KKREYSLHDT EEEAAAAYQS  120
KWNQFRAAML ARKAQPPLPE HAALSSLSLV SCVSSSVSCK RKAQEAQNRE GSLMDVHCDP  180
IDESLRNFSL KSMEIPENVM LYLKDENPIS DSFRPTDELP PDDFTKPEDM FRASDFIGAT  240
YKPLDDDDYI GLADISHLPL PINDPEFDLD AELDWSGFDF TSMEHELKLL *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.188491e-91callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG193300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956541.11e-141ethylene-responsive transcription factor ERF118
RefseqXP_004956542.11e-141ethylene-responsive transcription factor ERF118
RefseqXP_004956543.11e-141ethylene-responsive transcription factor ERF118
RefseqXP_004956544.11e-141ethylene-responsive transcription factor ERF118
RefseqXP_012698904.11e-141ethylene-responsive transcription factor ERF118
RefseqXP_022679546.11e-141ethylene-responsive transcription factor ERF118
TrEMBLA0A3L6QMK21e-172A0A3L6QMK2_PANMI; Uncharacterized protein
STRINGPavir.Ba03000.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50203763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.24e-12ERF family protein