PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG193100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 280aa    MW: 31027.1 Da    PI: 4.6315
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG193100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.44.8e-1573122255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          ++ GVr ++ +grW+AeIrdp++   ++r s+g+++++e Aa+a+ a++++++ 
  Pavir.2NG193100.1.p  73 RFCGVRKRP-WGRWAAEIRDPVK---KTRKSIGSYDSEEAAAAAYQAYANQIRE 122
                          566******.**********654...5**********99999999999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.24E-1372123IPR016177DNA-binding domain
CDDcd000181.53E-1272107No hitNo description
Gene3DG3DSA:3.30.730.102.2E-1673122IPR001471AP2/ERF domain
PfamPF008473.1E-973122IPR001471AP2/ERF domain
SMARTSM003804.1E-1073137IPR001471AP2/ERF domain
PROSITE profilePS5103216.1673130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MMPCMKKVRI FCSDPDATDS SGDEEGQNTK VKKMVREVLI PVNNSKTSKC VKTLVPCGTK  60
DLEVSKKKEK SSRFCGVRKR PWGRWAAEIR DPVKKTRKSI GSYDSEEAAA AAYQAYANQI  120
REELLAIKAQ QFVSEHADMS SSSSVSCVSS SGCEQTVQVQ KGVFMEIDPE PLDEVLLNFS  180
TPKEISMDVL LGRIDEISVS DSISLANELP HDDFTRIEDA FPISDFIGAT HKPLDEDYIG  240
LANISHLPLP MKDPAFNLDA ELDWSGFDFD TIEHELQVL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG193100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956545.11e-157ethylene-responsive transcription factor ERF021
RefseqXP_004956547.11e-157ethylene-responsive transcription factor ERF021
RefseqXP_022679717.11e-157ethylene-responsive transcription factor ERF021
TrEMBLK3ZVW01e-155K3ZVW0_SETIT; Uncharacterized protein
STRINGPavir.Ba02999.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50203763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.21e-14ERF family protein