PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG157700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 364aa    MW: 41036 Da    PI: 6.0609
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG157700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.65.2e-12131177147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          ++ WT+eE+  ++++v  lG g+Wk I++++   Rt+ q+ s+ qky
  Pavir.2NG157700.1.p 131 KQYWTAEEHRDFLRGVDCLGRGSWKFISEYFVPSRTPAQLASHAQKY 177
                          688*****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007177.4558IPR001005SANT/Myb domain
PROSITE profilePS500904.182956IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.8E-11123183IPR009057Homeodomain-like
PROSITE profilePS5129415.649126182IPR017930Myb domain
SuperFamilySSF466899.66E-16127183IPR009057Homeodomain-like
TIGRFAMsTIGR015575.5E-13129180IPR006447Myb domain, plants
SMARTSM007171.7E-7130180IPR001005SANT/Myb domain
PfamPF002491.6E-9131177IPR001005SANT/Myb domain
CDDcd001672.68E-6134178No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MDPKATQEWT SCEEEEFKAH FAELWYEKSC DRMEALAKRF PSKSIQQLRD KYAEVFADML  60
CGETDGEPSK DDATIDWDDW YKLLEGETQD LVMDPLVETS LFEPSKQLLF EPAGHQEEIQ  120
KSHCKSSRKR KQYWTAEEHR DFLRGVDCLG RGSWKFISEY FVPSRTPAQL ASHAQKYFDR  180
IEKNELDDTR QRHSINDVRL VNHGMIISAH SCTEPGKGKG IASSIPPTIL TEDIDILQSL  240
AQGMPELGQA SNSPSNLAEQ MTHNNHILES FQLEVSGIPS PRAQGSVLLD QSRAENRAYP  300
SRKRGIGAAT NGRHEKKRML PGVLTAQTSQ VLQLGQGSNG AANLSYEIVP IKRHNLHQNV  360
PLF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126131SRKRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG157700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804405.10.0transcription factor DIVARICATA-like
TrEMBLA0A3L6TDA00.0A0A3L6TDA0_PANMI; Uncharacterized protein
STRINGPavir.Ba01394.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1975668
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.15e-22MYB family protein