PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG152300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 295aa    MW: 31588.8 Da    PI: 10.4007
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG152300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.54.1e-15122166347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE+  ++ + ++lG+g+W+ I+r++ ++Rt+ q+ s+ qky
  Pavir.2NG152300.1.p 122 PWTEEEHRMFLAGLEKLGKGDWRGISRHFVTTRTPTQVASHAQKY 166
                          8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.68318IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129419.017115171IPR017930Myb domain
SuperFamilySSF466898.61E-19116172IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-18118170IPR006447Myb domain, plants
SMARTSM007172.7E-12119169IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-12119165IPR009057Homeodomain-like
CDDcd001671.12E-10122167No hitNo description
PfamPF002492.6E-12122166IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MARKCSSCGN NGHNSRTCSG HRGHESSIST SSNSSASTSC GGLRLFGVQL QVVSPPLKKC  60
LSMECLSPAA YYGAAAASSL SPSVSSSSSS LVSIEESAER VSSGYTSDGL RGRIQERKKG  120
VPWTEEEHRM FLAGLEKLGK GDWRGISRHF VTTRTPTQVA SHAQKYFLRQ NSLTQKKRRS  180
SLFDAVEGDK KVAMPRIASV SELQFPSLSP RSVDARTKGA MVVPPCLNLM SSTSPCAGGG  240
RASQPQHPSS MNLMAKPQVQ LEMPDLELKM STSRLSDQPG PSRSMPFFGT IRVT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.8690.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG152300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809031.10.0transcription factor MYBS3-like
TrEMBLA0A2S3H8S60.0A0A2S3H8S6_9POAL; Uncharacterized protein
TrEMBLA0A2T7E9440.0A0A2T7E944_9POAL; Uncharacterized protein
STRINGPavir.J19866.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42313873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.16e-47MYB_related family protein