PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG149000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family LBD
Protein Properties Length: 323aa    MW: 34179.1 Da    PI: 6.6195
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG149000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260927.3e-294108199
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklq 84 
                          +C++C+vlr++C++ C++++++     p++q++++ +++k++G++ +l+l++a+p+   r+++++sl+yeA+ r+ +PvyG+vg++++++
  Pavir.2NG149000.1.p   4 SCNGCRVLRKGCTDACTIRQCLqwikaPDAQANATVFLAKFYGRAGLLNLIDAAPDAAlRPAVFRSLLYEACGRIVNPVYGSVGLLWSGK 93 
                          6*************************999*************************99988******************************* PP

               DUF260  85 qqleqlkaelallke 99 
                          ++l+q+++e++l+++
  Pavir.2NG149000.1.p  94 WHLCQAAVEAVLRGA 108
                          *********998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.8413110IPR004883Lateral organ boundaries, LOB
PfamPF031953.6E-234103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MRLSCNGCRV LRKGCTDACT IRQCLQWIKA PDAQANATVF LAKFYGRAGL LNLIDAAPDA  60
ALRPAVFRSL LYEACGRIVN PVYGSVGLLW SGKWHLCQAA VEAVLRGAPI VQISDEDAAA  120
ASPAHLHKAA AASCYDIRHV AAKSKPADDA QSSKGGSVLH KVAKPGRTRF KRSSSSSSPP  180
SKRQATKASK PSGTDDDADD VVMADRRQHD DEQHVQLVMA DHASSDDDTH HHQEASAASL  240
DTDAEAASHV SQAEQIPAAE EDHLQQEQQQ QHQPGLDLTL GFGLFAPVAA AARPPTPPAD  300
AGCSRGAWST AEEPGVVGFQ FL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.127120.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG149000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0954392e-90FP095439.1 Phyllostachys edulis cDNA clone: bphylf039l14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805937.11e-172nucleolin 1-like
TrEMBLA0A3L6T3571e-172A0A3L6T357_PANMI; LOB domain-containing protein 41-like
STRINGPavir.J00526.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.19e-65LOB domain-containing protein 41