PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.2NG144200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 234aa MW: 24961.1 Da PI: 9.9897 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 96.8 | 1.6e-30 | 86 | 139 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv++v++L G++kA+Pkti++lm+v+gLt+e+v+SHLQkYRl Pavir.2NG144200.1.p 86 RPRLVWTPQLHKRFVDVVAHL-GIKKAVPKTIMQLMNVEGLTRENVASHLQKYRL 139 59*******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.648 | 83 | 142 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-31 | 83 | 144 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.15E-19 | 84 | 143 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.7E-24 | 87 | 139 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.4E-8 | 89 | 138 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 234 aa Download sequence Send to blast |
MEWETGLPGG EELTPLSQPL VPPGLAAAFR IPPEPGRTLL DVHRASAATV SRLRRASSGP 60 SGGGGGGGGE GAAVAAADAI NNSSKRPRLV WTPQLHKRFV DVVAHLGIKK AVPKTIMQLM 120 NVEGLTRENV ASHLQKYRLY VKRMQGLSNE GPSASDHIFA STPVPHSLVH EPQPQQVPAP 180 PPMYQYHHSM PVPLGMVPSN KSGGSGYGYG YGYHHHQQAS HSQSHHHYRA GDN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 2e-33 | 86 | 142 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pvr.7614 | 0.0 | callus| root |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that is essential for the generation of the circadian clock oscillation. Binds to specific sites on CCA1 promoter leading to CCA1 activation (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.2NG144200.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Circadian oscillation with peaks at subjective dusk. {ECO:0000269|PubMed:16164597}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC165172 | 2e-99 | AC165172.2 Zea mays clone CH201-171E16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817497.1 | 1e-103 | transcription factor PCL1 | ||||
Swissprot | Q94DH3 | 2e-82 | PCL1_ORYSJ; Transcription factor PCL1 | ||||
TrEMBL | A0A2S3HMQ4 | 1e-102 | A0A2S3HMQ4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ba03246.1.p | 1e-168 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1620 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G46640.2 | 3e-60 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.2NG144200.1.p |