PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG136300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 487aa    MW: 50985 Da    PI: 6.3919
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG136300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.21.6e-09291338455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L++l+P +    +k + Ka +L + ++Y++sLq
  Pavir.2NG136300.1.p 291 SHSLAERVRREKISQRMKLLQDLVPGC----NKVVGKAVMLDEIINYVQSLQ 338
                          8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.33E-10285342No hitNo description
SuperFamilySSF474591.44E-16285356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.256287337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16289355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-6291338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10293343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MNCGPPDQLP PASAPAPSCF LNLNWDQSMA AAAAGDHLDP ALSSMVSSPA SNSTAAAATD  60
GLALHGISPQ PQYGGTPLSS PPKLNLSMMG QFHHYQAPQV GGGGPGGLPI LENLMPMGHL  120
DQFLADPGFA ERAARLSGFD GRPGGSGYGG AVPGQFGLPD AGPVGALKEL ELGSGRDESS  180
VSDPASASAE MALKGPSDGN AKKRKASGKG KGKDGPGSTA AKDPAKEESS GKRCKSADES  240
NGAEDNSGKG KAAQSNSENG GKKQVKDSSK PPEPPQDYIH VRARRGEATD SHSLAERVRR  300
EKISQRMKLL QDLVPGCNKV VGKAVMLDEI INYVQSLQRQ VEFLSMKLAT VNPQLDFNNL  360
PNLLPKDIHQ SCGPMQNLHF PLETSGAPLP YLNQSHQGSP LGCSLTNGMD NQSNMHPLDP  420
AFCRQMNSQH PFLNGVSDVA SQVGTFWQDD LQSVVHMDIG QGQEIAATSS NSYNGSLQTV  480
HMKMEL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.20420.0callus| leaf| root| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG136300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971039.10.0transcription factor bHLH77
TrEMBLA0A2T7DCJ50.0A0A2T7DCJ5_9POAL; Uncharacterized protein
STRINGPavir.Ea03809.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.12e-62bHLH family protein