PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG126200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 557aa    MW: 61379 Da    PI: 6.8649
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG126200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.7e-13358404455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h   ErrRR+++N++f  Lr+l+P       +K++ a+iL  ++eY+k+L+
  Pavir.2NG126200.1.p 358 SHVLKERRRREKLNERFIALRSLVPFV-----TKMDRASILGDTIEYLKQLR 404
                          79999*********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.5E-22185IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.06354403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.14E-17357419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.14E-13358408No hitNo description
Gene3DG3DSA:4.10.280.104.2E-17358414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.5E-11358403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-16360409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00868485553No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MCASYCFPPG IGLPGEAFAR RGYVWLCGAN KVDSKLFSRA ILARQSAGIQ TVACIPVNDD  60
DVLEIGTTEK VAEDSGLIQY ARSIFMDQHG TPIMPTLSGH STSNPSTHIN HQPFQMKMEK  120
YIGGINVQPN NPNPEDENIE MEDEDDILDS ETHTENGSRR HLPLDNMGNE QARPYARSSE  180
LMQIERSESL RAGCTNHVDD EISMLMVCQN GNNIPAQYEL GSWHFPYENL IISSEFLQSS  240
AAQDQAALAE NAHYIETVLT ILRRNACRRA QAAALSKNSS FSSWNGNKGT NNDRQRMLIS  300
EGSPQRMLKS VLFIGAPAAG YSHQWHRREV QPPEPSRDDG EGTSRSRRGQ GQAELSASHV  360
LKERRRREKL NERFIALRSL VPFVTKMDRA SILGDTIEYL KQLRRRIQEL ESRARLQKID  420
GHLTAPVVPA EKRAHQSASS AAMVETGSSR MRAVEATSSS CGGAGRPAAA ASAEVQVSII  480
GSDALVEVRC PRRDGLLLRV MEALHRELGL EVTTVQASSA GDVLLVELRA EVREVHGRRS  540
GINEVKRAIH LVISSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-13358412862Transcription factor MYC2
5gnj_B4e-13358412862Transcription factor MYC2
5gnj_E4e-13358412862Transcription factor MYC2
5gnj_F4e-13358412862Transcription factor MYC2
5gnj_G4e-13358412862Transcription factor MYC2
5gnj_I4e-13358412862Transcription factor MYC2
5gnj_M4e-13358412862Transcription factor MYC2
5gnj_N4e-13358412862Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1362367ERRRRE
2363368RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG126200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankZMU578992e-42U57899.1 Zea mays repressor-like protein (in1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801359.10.0basic helix-loop-helix protein A
TrEMBLA0A3L6TBW40.0A0A3L6TBW4_PANMI; Uncharacterized protein
STRINGSi029106m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88633036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.12e-30bHLH family protein