PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.2NG104300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 313aa MW: 34442.4 Da PI: 9.7 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.5 | 4.4e-52 | 23 | 155 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhP+dee++++yL++kv ++ ++ +i evd++k+ePw+Lp k+k +e+ewyfF ++d+ky+tg r+nrat++gyWkatgkdk Pavir.2NG104300.1.p 23 LPPGFRFHPRDEEIINFYLTPKVFRRGFTS-IAIGEVDLNKTEPWELPGKAKMGENEWYFFYQKDRKYPTGMRANRATEAGYWKATGKDK 111 79*************************998.78***************99999************************************* PP NAM 91 evlskkgel.....vglkktLvfykgrapkgektdWvmheyrle 129 e++ +g + +g+kktLvfykgrap+g kt+Wvmhe+rle Pavir.2NG104300.1.p 112 EIYGVTGGVappviIGMKKTLVFYKGRAPRGAKTNWVMHEFRLE 155 ***98555567778***************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.29E-60 | 16 | 191 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.866 | 23 | 191 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.2E-27 | 24 | 154 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 313 aa Download sequence Send to blast |
MTKRTMGDQQ QPQGMSISDS LKLPPGFRFH PRDEEIINFY LTPKVFRRGF TSIAIGEVDL 60 NKTEPWELPG KAKMGENEWY FFYQKDRKYP TGMRANRATE AGYWKATGKD KEIYGVTGGV 120 APPVIIGMKK TLVFYKGRAP RGAKTNWVMH EFRLEGSNRL PSPTSISTST ATLKYSSASK 180 DEWVVCRVFH KTTGIKKVPG PASSSFDIAM AYAGIDQSSV PMPMPMPTQY PILPYFTMDP 240 AVPYYSTTCA SSMSVPPVMP PMASVGSAGH DMNGAQFGNP IANVSSMSFF HQMGMEAEGT 300 SSFISTPESR PS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-47 | 20 | 197 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-47 | 20 | 197 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-47 | 20 | 197 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-47 | 20 | 197 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-47 | 20 | 197 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-47 | 20 | 197 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-47 | 20 | 197 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-47 | 20 | 197 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-47 | 20 | 197 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-47 | 20 | 197 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-47 | 20 | 197 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-47 | 20 | 197 | 17 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-47 | 20 | 197 | 14 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-47 | 20 | 197 | 14 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at low levels in leaves. {ECO:0000269|PubMed:17098808}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.2NG104300.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025801540.1 | 0.0 | NAC domain-containing protein 79-like | ||||
Swissprot | Q9FLR3 | 8e-74 | NAC79_ARATH; NAC domain-containing protein 79 | ||||
TrEMBL | A0A2T7ERK5 | 0.0 | A0A2T7ERK5_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ba02955.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1452 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G07680.2 | 6e-75 | NAC domain containing protein 80 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.2NG104300.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|