PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG086600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 446aa    MW: 48089.7 Da    PI: 7.5859
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG086600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.52e-12257299855
                          HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                           Er+RR+++N++f+ L+ +lP+ a      K +K +iL +A eY++sLq
  Pavir.2NG086600.1.p 257 SERKRREKLNDSFHALKAVLPPgA------KKDKTSILIRAREYLRSLQ 299
                          6********************966......99999*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.891249298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-15250315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.35E-12251303No hitNo description
Gene3DG3DSA:4.10.280.105.1E-15253316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-12255304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-10257299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd146860.00365290318No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MDSSCSSWLH GYINNAGNNG FMCGYAAGSC THAELQYREE EEEEQFLSSS QQIQHHLNQI  60
SMRMNMDDDE ASVYDVPSSD GGGVFPPMGV HNHPIGVDGG HGLLIDPRHA GSFPSSSSSS  120
SLSLPSASLS CSPESSAHVL GTPAAAATTA CSQYLEVSSQ VPLPPAVSYD RHQYATNLHV  180
PAAAMAFKRY ARHLSPKRPP KPGECGQRMF KTAMSVLSKM HAAARYSAQQ QYYYQQAAAA  240
EAAAPPPSVN QLQHMFSERK RREKLNDSFH ALKAVLPPGA KKDKTSILIR AREYLRSLQS  300
KVAELEEKNR LLESRLARGD DSSDDGSRKD AADSGDEKVQ VEITKEAKDV RAAAAAGEPR  360
DDLCTLKIAV SSPCNMTDVA VRTLQCLKEQ IGDGVSLVAM STSGSAEAST TSARADLTLQ  420
ISRHRCGRSS RSRTPWRRSS PTPPP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1257262ERKRRE
2258263RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG086600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817328.10.0putative transcription factor bHLH041
TrEMBLA0A3L6R5J50.0A0A3L6R5J5_PANMI; Uncharacterized protein
STRINGPavir.Ba03537.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.14e-22bHLH family protein