PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2NG077300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 224aa MW: 23406.5 Da PI: 8.3057 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.2 | 3e-13 | 34 | 80 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+Er+RR+riN +++Lr+l+P a +++Ka+ L ++v+++++L Pavir.2NG077300.1.p 34 RSHSEAERKRRQRINAHLATLRTLVPAA-----SRMDKAALLGEVVRHVREL 80 68*************************9.....7***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.605 | 31 | 80 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-14 | 34 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.0E-11 | 34 | 80 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-13 | 34 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.26E-11 | 34 | 81 | No hit | No description |
SMART | SM00353 | 3.3E-12 | 37 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 6.6E-5 | 133 | 182 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MVPVGSEEAE VAMDGECSPP PPPAAAAPRS GPSRSHSEAE RKRRQRINAH LATLRTLVPA 60 ASRMDKAALL GEVVRHVREL RGEADAAAAG AAVAVPGEGD EVGVEEGQHC CCRGAGGEGD 120 RAAAATRRVR AWVCCADRPG LMSELGRAVR SVSARAVRAE IATVGGRTRS VLELDVGGQH 180 DGEGTPSRLA LQTALRAVLL SREELVAAEC YKRQRFSAHL ARV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 39 | 44 | ERKRRQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2NG077300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU969102 | 1e-179 | EU969102.1 Zea mays clone 326075 DNA binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025799424.1 | 1e-119 | transcription factor bHLH30-like | ||||
TrEMBL | A0A1E5W6B9 | 1e-123 | A0A1E5W6B9_9POAL; Uncharacterized protein | ||||
STRING | Si033077m | 1e-112 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4114 | 35 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38070.1 | 7e-12 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2NG077300.1.p |