PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG054200.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CPP
Protein Properties Length: 553aa    MW: 59629.9 Da    PI: 7.4528
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG054200.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.83.2e-16238276240
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                           +k+C+CkkskClk+YCeCfaag++Cse C+C++C Nk 
  Pavir.2NG054200.3.p 238 ACKRCSCKKSKCLKLYCECFAAGVYCSEPCSCQGCLNKP 276
                          589**********************************96 PP
2TCR50.83.3e-16323362140
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          ++k+gCnCkks+ClkkYCeC++ g+ Cs++C+Ce+CkN+ 
  Pavir.2NG054200.3.p 323 RHKRGCNCKKSSCLKKYCECYQGGVGCSSNCRCESCKNTF 362
                          589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.8E-17237278IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.046238363IPR005172CRC domain
PfamPF036385.8E-12240275IPR005172CRC domain
SMARTSM011143.5E-16323364IPR033467Tesmin/TSO1-like CXC domain
PfamPF036387.1E-12325361IPR005172CRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009934Biological Processregulation of meristem structural organization
GO:0048444Biological Processfloral organ morphogenesis
GO:0051302Biological Processregulation of cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MDDHHRGMHL AAKNAESCGY LLSKLTGGGE ISDRAHPSAS GQVYYQEIVM GEDQAENPQI  60
FQDGQQTIST EEIQDNIYEA NGCIPLDYKV ESQQRGIRRR CLVFEAAGFS NTVVQKETVE  120
SLSVSTCKGK SHVQTQPRGL RGIGLHLNAL ALTPKGKMAS QDPMASGLHP SSGSEKDVHG  180
KFLSAGEKFP DSGGELLEFP MDDCSAGGFP VNDHVSSQSV SPQKKRRKTD NNGDDGEACK  240
RCSCKKSKCL KLYCECFAAG VYCSEPCSCQ GCLNKPIHEE IVLSTRKQIE FRNPLAFAPK  300
VIRMSDAGPE TGEDPNSTPA SARHKRGCNC KKSSCLKKYC ECYQGGVGCS SNCRCESCKN  360
TFGRRDADTE LTEEMKQEGE QAENCGKEKE NDQQKANLQN EDHPLLELVP ITPPFDLSSS  420
LLKLPNFSSA KPPRPSKARS GNSRSSASKV TATLQSCKSS KVAGSAIDEE MPDILKEADS  480
PNNCVKTTSP NGKRVSPPHN ALSISPNRKG GRKLILKSIP SFPSLMGESN SGSTMNDTEN  540
AFSTSPLVLG PS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-1524036012120Protein lin-54 homolog
5fd3_B2e-1524036012120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223227KKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.139120.0leaf| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG054200.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799594.10.0protein tesmin/TSO1-like CXC 2
TrEMBLA0A2S3GWC50.0A0A2S3GWC5_9POAL; Uncharacterized protein
STRINGPavir.Bb00411.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.15e-88TESMIN/TSO1-like CXC 2