PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG044300.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family LBD
Protein Properties Length: 600aa    MW: 64696.4 Da    PI: 4.8637
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG044300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.17.8e-30221241100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq..pkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqql 87 
                          +C aC+ lrr+C+++Cv+apyfpae   p++f +vh++FGasn  ++l+++ ++ er++a+++lv eA+ar+rdP  G+++ +  lq   
  Pavir.2NG044300.2.p  22 PCGACRSLRRRCVPGCVFAPYFPAEGdgPSRFTAVHRVFGASNAARMLEDVeRPGERRRAAETLVEEARARVRDPALGCLSYVAVLQMLN 111
                          7***********************65458**********************55566********************************** PP

               DUF260  88 eqlkaelallkee 100
                          e+++++++++++e
  Pavir.2NG044300.2.p 112 EKAREQVDAVRAE 124
                          *999999998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.60221125IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-3022122IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MPEDEVELVS WTAAAQPAVQ MPCGACRSLR RRCVPGCVFA PYFPAEGDGP SRFTAVHRVF  60
GASNAARMLE DVERPGERRR AAETLVEEAR ARVRDPALGC LSYVAVLQML NEKAREQVDA  120
VRAEIAAEFG PEAASEPVDL AAAGPEVKLE AMAQAERALA QAREKDAKML VARRAVDLKW  180
RKLRQAERRA AGERLRLPGG RWLDTNNQMA ETENTAAAAA VTELDSPEGN GHPQQSAPAA  240
AANQHRHLAA QQAWAEQGIP EGYGHGQLHE LMAETQQTTA GAEALTSEQA PAAALQHHDS  300
AATRLDGTGI SFLDRHQVAA AGELSKKLDT MIRRFAAAQQ YDDPAAARYP WMGPDVSPRL  360
RQPPQPQDTM PLVAEARDQD LMLLLAQQIA EAEQDAMMQL LAAGAPQRDI LAAAAKVARE  420
QDIMAQVATA ELSREQEMIV RQARQPEMTM LLQAAAAHQD PMARYSKTEL DISLGQGHPY  480
RHQPTVQQLA DVERVAREPN TTTMQQVAAY MNGEHVSDSG VTAAFQLPGS AEAAPFRVQQ  540
QPPPQGQTPS ALGLEVDSSL PPLPPSLGGP HPHGQVSQQQ GTDGGDEDQS SDLSVYLFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-26131252111LOB family transfactor Ramosa2.1
5ly0_B2e-26131252111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG044300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803413.10.0uncharacterized protein LOC112882549
TrEMBLA0A2S3GVL30.0A0A2S3GVL3_9POAL; Uncharacterized protein
STRINGPavir.Ba02246.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.41e-28LBD family protein