PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG040500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TCP
Protein Properties Length: 431aa    MW: 45356.6 Da    PI: 9.8461
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG040500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP127.51.4e-39571992133
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssasec....ea 75 
                           g+kdrhsk++T++g RdRRvRls+ +a++f+dLqd+LG+d++sk+ieWL+++a +ai++l+++                          
  Pavir.2NG040500.1.p  57 SGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGYDQPSKAIEWLIKAAAAAIDKLPSLdaaagfpahpasA------KdlpaA- 139
                          689*************************************************************7777654332220......122221. PP

                  TCP  76 esssssas........nsssgkaaksaakskksqksaasalnlak.esrakarararertrekmrik 133
                                          +++++++ + + +s+ s++s+ s+l+l++ esr kar+rarer++  + ++
  Pavir.2NG040500.1.p 140 -------LpdappdddHHHQQQQLTRSGCSSMSETSKGSVLSLSRsESRVKARERARERSAAAQDKD 199
                          .......02222222234444677778899999999999********************99877766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.0E-4058197IPR005333Transcription factor, TCP
PROSITE profilePS5136932.18959117IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.54178200IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MEAVLGGGDG RGKRARVKAG GPDPDPEPEP KRGRPAPAPA PWPPHPASRI YRVSRASGGK  60
DRHSKVYTAK GIRDRRVRLS VATAIQFYDL QDRLGYDQPS KAIEWLIKAA AAAIDKLPSL  120
DAAAGFPAHP ASAKDLPAAL PDAPPDDDHH HQQQQLTRSG CSSMSETSKG SVLSLSRSES  180
RVKARERARE RSAAAQDKDK EPAADDAATG RRAAPTASAQ AASFTELLTG MAAAEHKQQP  240
QPQSSAPWQA TAVPATANYI GFAQPRKAAG HAMAHSFASP APHLGNIASV AMAPAQHFGL  300
ASGAVTIASG GAEPHAEMTH FSFLQDHFMP VHAAPASGPA GDYDLNFSMS SGLVGVNSRG  360
TLQSNSQPHI SGHHHHQLQR LSTPLDAPNI PFLFSPAAAV TTPTTADNQF AAFQLWNGFQ  420
HADMKEKGKN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-3064118155Putative transcription factor PCF6
5zkt_B3e-3064118155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG040500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0669301e-171BT066930.1 Zea mays full-length cDNA clone ZM_BFb0110J16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020396804.10.0transcription factor PCF6
TrEMBLA0A1E5W0K90.0A0A1E5W0K9_9POAL; Transcription factor PCF6
STRINGPavir.Ba03864.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.22e-34TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2