PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2NG036300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 510aa MW: 53770.6 Da PI: 6.115 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 56.8 | 3.9e-18 | 319 | 365 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ ErrRRdriN+++ L+el+P++ K +Ka+iL +A+eY+ksLq Pavir.2NG036300.1.p 319 VHNMSERRRRDRINEKMRALQELVPHC-----NKTDKASILDEAIEYLKSLQ 365 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.95E-18 | 310 | 369 | No hit | No description |
SuperFamily | SSF47459 | 1.44E-21 | 313 | 380 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.743 | 315 | 364 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.5E-15 | 319 | 365 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.3E-22 | 319 | 374 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.4E-18 | 321 | 370 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 510 aa Download sequence Send to blast |
MPDAPLSQTD AAHGFLRSLN LGERRESVPG FSVLRRLVGA SLVLPTAELL RTSCGALLQE 60 EAGGRRSELS SSSITCSLSL FSCCFCSTSC LATILWLKSG MGVRYLGAPG SKKWILAMDG 120 GERPAAAQKR PFPPDGELVE LLWQDGAVVA HSQAQRAFAG AGNTGASGVT GEAAAAAWLP 180 GGGALGGDVY SQLWQSIALA QADGRVGAPA RARPPAQSGN SAAGSSRTAG EVGSSFCGSN 240 LVAAARHLDD AIDDVAALPP QPPDEPGAST SSGWNSNALL KRSRDDCDGR SEDADFDTVD 300 ETPPSRRPAS KRRTRAAEVH NMSERRRRDR INEKMRALQE LVPHCNKTDK ASILDEAIEY 360 LKSLQMQVQI MWMSTGMAPM MLPGAHQLMP PMSMGLNSTC MPPAAQFLSH VQTVPPFLSN 420 PLPNQIPQIS PAFTSAPNVT NQVQSNRVAQ PRNPFLHPND ALTSTPQLPS LFGYGPQMAQ 480 ENEIQELLAC TAAPALDAEP PSSSDGTGT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 310 | 327 | KRRTRAAEVHNMSERRRR |
2 | 323 | 328 | ERRRRD |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in the node portions of the stem. Expressed in the leaves and the basal part of shoots. {ECO:0000269|PubMed:22984180}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may act as negative regulator of phyB-dependent light signal transduction (PubMed:17485859). Transcription activator that acts as positive regulator of internode elongation. May function via regulation of cell wall-related genes. May play a role in a drought-associated growth-restriction mechanism in response to drought stress (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2NG036300.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by light in dark-grown etiolated seedlings (PubMed:17485859). Circadian oscillation under 12 h light/12 h dark cycle conditions, with peaks in the middle of the light period (PubMed:17485859, PubMed:22984180). Down-regulated by cold and drought stresses (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025804058.1 | 0.0 | transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X2 | ||||
Swissprot | Q10CH5 | 1e-101 | PIL13_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13 | ||||
TrEMBL | A0A2T7EKQ1 | 0.0 | A0A2T7EKQ1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ba03888.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3174 | 34 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 2e-33 | phytochrome interacting factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2NG036300.1.p |
Publications ? help Back to Top | |||
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