PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG029200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 324aa    MW: 34869.6 Da    PI: 7.685
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG029200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.74.1e-161462148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W++eEd +l++++++ G+g +W + +++ g++R++k+c++rw++yl
  Pavir.2NG029200.1.p 14 KGPWSPEEDSKLKEYIHKNGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 62
                         79*********************************************97 PP
2Myb_DNA-binding38.62.5e-1269111246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          g ++ +Ed ++ ++++  G++ W+ Ia+ ++ gRt++++k++w++
  Pavir.2NG029200.1.p  69 GDFSDDEDRIICNLFATIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                          679******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.98962IPR017930Myb domain
SuperFamilySSF466894.39E-2611109IPR009057Homeodomain-like
SMARTSM007174.4E-121364IPR001005SANT/Myb domain
PfamPF002492.1E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-231569IPR009057Homeodomain-like
CDDcd001672.91E-91662No hitNo description
PROSITE profilePS5129421.79363117IPR017930Myb domain
SMARTSM007171.0E-1167115IPR001005SANT/Myb domain
PfamPF002494.9E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-2370118IPR009057Homeodomain-like
CDDcd001671.68E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MGRAPCCDKS SVKKGPWSPE EDSKLKEYIH KNGTGGNWIA LPHKAGLKRC GKSCRLRWLN  60
YLRPNIKHGD FSDDEDRIIC NLFATIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMHG  120
LQPYNHHSSK KKQQQQQLLF LTASSAAPPE AAGPSSLHHY SSLHDHYSHH YSRSGSYGSS  180
NSSTSVLSAA AGSCDLLVNG DHHHIHSTTI PSCLDSGGGL GLYLDELCAT TTSSVVHGQG  240
LSPDPESFVF GGFQQLLEED HHKALLLAAG AANQLDQQHS AAASSFYDEA KPLVSLTGGG  300
NGAGGTSTGS SFFYDSSYSN NES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG029200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956269.11e-136myb-related protein Hv1
TrEMBLA0A2S3GXU51e-175A0A2S3GXU5_9POAL; Uncharacterized protein
STRINGPavir.Ba03178.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.11e-74MYB family protein