PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG010900.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 390aa    MW: 44409.4 Da    PI: 6.6244
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG010900.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92e-1786132148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g WT+eEd +lv++v+q+G   W+ Ia++++ +R +kqc++rw+++l
  Pavir.2NG010900.3.p  86 KGQWTPEEDRKLVKLVEQFGLMKWSYIAQMLP-RRVGKQCRERWHNHL 132
                          799******************9**********.*************97 PP
2Myb_DNA-binding50.16.1e-16140180345
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                           W+ eEd  l++a+k+ G++ W  Ia++++ gRt++++k++w+
  Pavir.2NG010900.3.p 140 IWSDEEDMVLIQAHKEVGNK-WVEIAKRLP-GRTENSIKNHWN 180
                          6*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.74581136IPR017930Myb domain
SuperFamilySSF466891.87E-2983179IPR009057Homeodomain-like
SMARTSM007172.9E-1285134IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-2787140IPR009057Homeodomain-like
CDDcd001673.75E-1389132No hitNo description
PfamPF139211.8E-1789146No hitNo description
PROSITE profilePS5129418.73137187IPR017930Myb domain
SMARTSM007177.4E-16137185IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-19141185IPR009057Homeodomain-like
CDDcd001672.90E-12141183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MLPSATFNDL QYSAERGTKK PIFDHAASID RIRTVESQLH LLTPKTEVSH LTENGLVSYK  60
ACETNGRFVP RKETYSISLK RANVVKGQWT PEEDRKLVKL VEQFGLMKWS YIAQMLPRRV  120
GKQCRERWHN HLRLNIKKDI WSDEEDMVLI QAHKEVGNKW VEIAKRLPGR TENSIKNHWN  180
ATKRRQFARR RSHTSSKQGP KSGTLLQNYI KCLGIGPSKN VVAPLAPPTL SPSSSVPATP  240
REGPAKMIDE RLEYNNPSNI LDSQGILSIH EQNYSKAQSC EEHAVAPICD DFSIDMLCDT  300
LFHTKEDSCF QVYTVDDDMD MNCIFNHVDH AIKVNCEIDM EMMWDDEDGL GCVEEPAGSP  360
QIEDVHVKEE MDLIEMVTVT QKYGKAEKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-40841872105MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-40841872105C-Myb DNA-Binding Domain
1msf_C2e-40841872105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.421770.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG010900.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432529e-41AC243252.2 Panicum virgatum clone PV_ABa094-H10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796038.11e-176transcription factor MYB41-like
TrEMBLA0A3L6T7990.0A0A3L6T799_PANMI; Uncharacterized protein
STRINGPavir.J37434.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.18e-62myb domain protein 98