PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG010900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 438aa    MW: 49979.5 Da    PI: 6.2327
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG010900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.4e-17134180148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g WT+eEd +lv++v+q+G   W+ Ia++++ +R +kqc++rw+++l
  Pavir.2NG010900.1.p 134 KGQWTPEEDRKLVKLVEQFGLMKWSYIAQMLP-RRVGKQCRERWHNHL 180
                          799******************9**********.*************97 PP
2Myb_DNA-binding49.97.2e-16188228345
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                           W+ eEd  l++a+k+ G++ W  Ia++++ gRt++++k++w+
  Pavir.2NG010900.1.p 188 IWSDEEDMVLIQAHKEVGNK-WVEIAKRLP-GRTENSIKNHWN 228
                          6*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.745129184IPR017930Myb domain
SuperFamilySSF466892.3E-29131227IPR009057Homeodomain-like
SMARTSM007172.9E-12133182IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-27135188IPR009057Homeodomain-like
PfamPF139212.1E-17137194No hitNo description
CDDcd001672.51E-13137180No hitNo description
SMARTSM007177.4E-16185233IPR001005SANT/Myb domain
PROSITE profilePS5129418.73185235IPR017930Myb domain
CDDcd001671.86E-12189231No hitNo description
Gene3DG3DSA:1.10.10.604.0E-19189233IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MDFSCFQPHT GICNYLQFDS YMQENGHCYE LHPVDHPFEA IGDYRSGSML PSATFNDLQY  60
SAERGTKKPI FDHAASIDRI RTVESQLHLL TPKTEVSHLT ENGLVSYKAC ETNGRFVPRK  120
ETYSISLKRA NVVKGQWTPE EDRKLVKLVE QFGLMKWSYI AQMLPRRVGK QCRERWHNHL  180
RLNIKKDIWS DEEDMVLIQA HKEVGNKWVE IAKRLPGRTE NSIKNHWNAT KRRQFARRRS  240
HTSSKQGPKS GTLLQNYIKC LGIGPSKNVV APLAPPTLSP SSSVPATPRE GPAKMIDERL  300
EYNNPSNILD SQGILSIHEQ NYSKAQSCEE HAVAPICDDF SIDMLCDTLF HTKEDSCFQV  360
YTVDDDMDMN CIFNHVDHAI KVNCEIDMEM MWDDEDGLGC VEEPAGSPQI EDVHVKEEMD  420
LIEMVTVTQK YGKAEKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-401322352105MYB PROTO-ONCOGENE PROTEIN
1mse_C6e-401322352105C-Myb DNA-Binding Domain
1msf_C6e-401322352105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.421770.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG010900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432521e-40AC243252.2 Panicum virgatum clone PV_ABa094-H10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796038.10.0transcription factor MYB41-like
TrEMBLA0A2T7EK850.0A0A2T7EK85_9POAL; Uncharacterized protein
STRINGPavir.J37434.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28063788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.12e-61myb domain protein 98