PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG008600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 364aa    MW: 38470.2 Da    PI: 8.3277
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG008600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.72e-31240295156
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                          k+r+ W+peLH++Fv a++qLGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Pavir.2NG008600.1.p 240 KARRTWSPELHRQFVAALNQLGGAQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 295
                          68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.232237297IPR017930Myb domain
SuperFamilySSF466898.6E-17238298IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-28238298IPR009057Homeodomain-like
TIGRFAMsTIGR015576.5E-25240295IPR006447Myb domain, plants
PfamPF002494.2E-7242293IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MVLDVLEIGM GSDLSLDLRY FASKAVWQAR DAPASDVDAC IRRLEEERGK IEMFRRELPL  60
CARLLAEVID VMKAEAGTKT KGDRKAAVAV EEDGAAGDKS KWMSTAQLWT GDSGREDAES  120
EKQDKGRSSP EAKSHGGGGA GAFLPFKAVG SGAPAFAPLC LRADDKAANA GTPDLSLLSP  180
PAIKSAPAAA GAAQESRRQV VGFAQAAARA VAMAPAGPSL SLQSQPQQTS QQQQQQAARK  240
ARRTWSPELH RQFVAALNQL GGAQVATPKQ IRELMKVDGL TNDEVKSHLQ KYRLHNRRAP  300
GSGIVSQPIV LVGGLWISQE QSSSQSGSPQ GPLHFSTSGI AVSSAATVSC EEEDGRSESY  360
GWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-15240293154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-15240293154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-15240293154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-15240293154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.6140.0callus| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG008600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804519.10.0transcription factor NIGTH1-like
TrEMBLA0A2T7EKE50.0A0A2T7EKE5_9POAL; Uncharacterized protein
STRINGPavir.Ba02240.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP181737107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.13e-32G2-like family protein