PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG587400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 366aa    MW: 39354.1 Da    PI: 6.9314
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG587400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.12.6e-10161208552
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 
                          kr++r + NR +A rs +RK  +i eLe+kv++L++e ++L  +l   
  Pavir.2KG587400.1.p 161 KRAKRIIANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTLF 208
                          9****************************************9888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003388.1E-15157221IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.53159222IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.84E-11161212No hitNo description
PfamPF001706.3E-9161206IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.5E-11161214No hitNo description
CDDcd147032.95E-23162211No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MAMPPKPGDP PQRSPGRSPN LNLPYPLPPV PGGAPPQPGG GLPAPRAGHH RRARSEVAFR  60
FPDDLGAGFD EIGSEDDLFS TFMDMDKIAG ADRDRAAETS SPPRPARHRH SASFDGFGMG  120
PAAGGTGGQQ DGAGGVFGEV MEAKKAMSSE QLAELAAIDP KRAKRIIANR QSAARSKERK  180
ARYITELERK VQTLQTEATT LSAQLTLFQR DTTGLSAENA ELKIRLQAME QQAQLRDALN  240
DALKQEVERL KIATGEMSKS NEPYNMGMQH VTYSPSFFQL SEQHAVQHHG NIQLPPHFQQ  300
PPPNVPSHQM LSHPNSISDM MQQDSLGRLQ GLDIGKGTVA VKSEAEVVVK SEGSSISAGE  360
SNSTF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.84690.0callus| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at high levels in roots, low level in leaf sheath, but not in leaf blade. Predominantly expressed in vascular tissues. {ECO:0000269|PubMed:14704272}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00303DAPTransfer from AT2G40620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG587400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9648700.0EU964870.1 Zea mays clone 282242 transcription factor RF2b mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799971.10.0transcription factor RF2b-like
SwissprotQ6S4P41e-144RF2B_ORYSJ; Transcription factor RF2b
TrEMBLA0A2S3H5C00.0A0A2S3H5C0_9POAL; Uncharacterized protein
TrEMBLA0A2T7F0530.0A0A2T7F053_9POAL; Uncharacterized protein
STRINGPavir.Bb03755.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26833683
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40620.14e-82bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Dai S,Zhang Z,Bick J,Beachy RN
    Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus.
    J. Gen. Virol., 2006. 87(Pt 3): p. 715-22
    [PMID:16476995]
  3. Liu Y,Dai S,Beachy RN
    Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription.
    Biochem. J., 2007. 405(2): p. 243-9
    [PMID:17371296]
  4. Dai S, et al.
    Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6
    [PMID:19104064]