PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2KG587300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | B3 | ||||||||
Protein Properties | Length: 952aa MW: 104861 Da PI: 6.9819 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.2 | 7.2e-19 | 360 | 459 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+kvl+ sd+++ grlvlpk +ae++ ++++e++ lt++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ Pavir.2KG587300.1.p 360 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGRPLTIQDARGKEWHFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQAGDTVTFSRIE 448 99**************************555567778***************9989999999***9.********************887 PP SSEE..EEEEE- CS B3 87 rsefelvvkvfr 98 +++lv+++++ Pavir.2KG587300.1.p 449 -PGGKLVMGFRK 459 .77777877776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.6E-31 | 352 | 469 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.88E-21 | 357 | 460 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.28E-24 | 358 | 459 | No hit | No description |
PROSITE profile | PS50863 | 11.589 | 360 | 461 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.8E-16 | 360 | 459 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.5E-22 | 360 | 460 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 14.8 | 621 | 671 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 7.9E-12 | 626 | 668 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 952 aa Download sequence Send to blast |
MAMAAAVAKR CMNPACGAPA TGAGGDWRKG WPLRSGAFAL LCDKCGLAYE QFVFCDIFHQ 60 KESGWRDCSF CGKRLHCGCV ASKNSYDLLD SGGVQCVTCM RNSAAQSASG QVVPKLFPCQ 120 NNPHIFSRSD ELLSGRKFEQ SPSLVLDSRN DDLAIVNKSN HPFMVKSIEV GQSSSILRQK 180 EIENGSRQIK WEQPTLSIGD MGIPFLTRSQ SALESPQCTR RDDNKDPTTD STTSESISEA 240 CLSMSLGIAN NGNKMEATST VERPILSPTT AIAEGRELTT ALSPFQHAQR ARHFLTRPPR 300 VGEGAVFDPT RDIFPHLRVA RPPAEGRGRN QLLPRYWPRI TNHELLQISG DSNSTIVPLF 360 EKVLSASDAG RIGRLVLPKA CAEAYFPPIS QPEGRPLTIQ DARGKEWHFQ FRFWPNNNSR 420 MYVLEGVTPC IQSLQLQAGD TVTFSRIEPG GKLVMGFRKA TNTVSLPDSQ ISAIANGSLL 480 SETLFSTAND NLGVVSGYPG FLQSIKGNAD LHPSSLYDHH MNSADGDVSW LKADKFGSRP 540 DEGSLQFLQK RSRNIGSKSR RFLIDAEDAM ELKLTWEEAQ ELLRPAPTSK PTIVMIEDYE 600 FEEYDEPPVF AKRSIFTIRA TGEQDQWIQC DNCSKWRRLP LTVVIASKWT CTENSWDPKS 660 CSCSAPEELT PKELQSVLQQ YEEMRRRKGN YGLKLNVAEM DASNLDALAT AAVFGDVGNQ 720 GTASVATTTK HPRHRPGCTC IVCIQPPSGK GPKHNPSCTC NVCMTVRRRF KTLMMRKKQR 780 QSEREEAEAS KKVAWMNRDE PEGSNLSRSP QTLDTTRDSS DVAMFDKVAD MNKGHIDLNF 840 HPAVRDDHQG QHGTQQPRPV SMMGLMEVAS RPLDNYMKQN GLTSLAGDQG GGSSSTATVP 900 PAPVESEERT SNEVRVASVE REREPDAMAV DEVGDNQNQQ DKSAVDDAAA T* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 3e-65 | 338 | 462 | 2 | 126 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 766 | 777 | RRRFKTLMMRKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.3412 | 0.0 | callus| leaf| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2KG587300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT062927 | 0.0 | BT062927.1 Zea mays full-length cDNA clone ZM_BFc0008I17 mRNA, complete cds. | |||
GenBank | JX428502 | 0.0 | JX428502.1 Zea mays subsp. mays clone pUT3100 ABI32 ABI3VP1 type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004958699.1 | 0.0 | B3 domain-containing protein Os07g0679700 | ||||
Swissprot | Q6Z3U3 | 0.0 | Y7797_ORYSJ; B3 domain-containing protein Os07g0679700 | ||||
TrEMBL | A0A2T7F052 | 0.0 | A0A2T7F052_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Bb03754.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6519 | 37 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 0.0 | HSI2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2KG587300.1.p |
Publications ? help Back to Top | |||
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