PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG583300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 342aa    MW: 37309.1 Da    PI: 7.7131
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG583300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1085e-344498155
              G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                         kprl+WtpeLHerFveav++LGG++kAtPkti+++m+++gLtl+h+kSHLQkYRl
  Pavir.2KG583300.1.p 44 KPRLKWTPELHERFVEAVQKLGGPDKATPKTIMRIMGIPGLTLYHLKSHLQKYRL 98
                         79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.9741101IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.8E-324299IPR009057Homeodomain-like
SuperFamilySSF466891.7E-174399IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-254499IPR006447Myb domain, plants
PfamPF002491.2E-104697IPR001005SANT/Myb domain
PfamPF143798.8E-24146192IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MMYHQQQLHG HNQHLSSRSG LPPEKQFLLQ GGGDAGLVLS TDAKPRLKWT PELHERFVEA  60
VQKLGGPDKA TPKTIMRIMG IPGLTLYHLK SHLQKYRLSK NLQSQANIGN AKNVLGCRTG  120
ADKPCEGNGS PSSHLNMEPQ IINRSMHISQ ALQMQIEVQR QLHEQLEVQR HLQLRIEAQG  180
KYLQSVLEKA QEALAKQSVD LDAGVLGEAA AAETQQLSEL ISRASATKLH HQHLLHLGGG  240
VGDGSVDSCL TACEGSQRDH DMLSIGLSPA PTPFEAARSS GGNDRGGATT SCEEFLFLQE  300
PAAARRGSSD QKLELDLNIN DRNPPRPRHC QKIDLNGSSW N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-2044100157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-2044100157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-2044100157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-2044100157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in phloem and/or cambium. {ECO:0000269|PubMed:15923329}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG583300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794611e-165HF679461.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB55 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803979.10.0myb-related protein 1-like isoform X1
SwissprotQ9SQQ91e-83PHL9_ARATH; Myb-related protein 2
TrEMBLA0A2T7F0860.0A0A2T7F086_9POAL; Uncharacterized protein
STRINGPavir.Bb03727.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35743879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.38e-83G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]