PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2KG571400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C3H | ||||||||
Protein Properties | Length: 236aa MW: 25896.8 Da PI: 9.1618 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.6 | 6.9e-06 | 61 | 82 | 8 | 26 |
GGGGTS...--TTTTT-SS-SS CS zf-CCCH 8 ffartG...tCkyGdrCkFaHg 26 + artG C +G rC++aHg Pavir.2KG571400.1.p 61 HLARTGaapSCVRGLRCRYAHG 82 568999999************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MADAFWVYVY KVQRCPQAGN HDWTACPYAH KGERARRRDP RSFSYLAVTC PAFRESQQQQ 60 HLARTGAAPS CVRGLRCRYA HGVFELWLHP ARFRTVMCEA GPRCPRRICF FAHFPAQLRA 120 ENDPVPLHGL PPLPPRVPRA PAAAAPLSFP RRVDLAMQAM PGKVRLYGGA AAGESSTSPA 180 PAAAAHVVPL QALPPPPPAS PDDDKAEVPA VQIHCRRASE DGDYPHFDLI KDMVL* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Specifically expressed in embryo (at protein level). {ECO:0000269|PubMed:9501112}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Embryo-specific transcription factor required at the globular to heart stage transition in embryo development. {ECO:0000269|PubMed:9501112}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2KG571400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC243226 | 0.0 | AC243226.1 Panicum virgatum clone PV_ABa006-K10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025801803.1 | 1e-111 | zinc finger CCCH domain-containing protein 10-like | ||||
Swissprot | O65036 | 4e-41 | C3H54_ARATH; Zinc finger CCCH domain-containing protein 54 | ||||
TrEMBL | A0A2S3H593 | 1e-110 | A0A2S3H593_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J20047.1.p | 1e-168 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11189 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07500.1 | 1e-42 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2KG571400.1.p |