PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG570800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 311aa    MW: 34581.3 Da    PI: 5.8152
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG570800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.71.3e-182673148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT eEd+ lv++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  Pavir.2KG570800.1.p 26 RGPWTVEEDLVLVNYITAHGEGRWNALARCAGLRRTGKSCRLRWLNYL 73
                         89********************************************97 PP
2Myb_DNA-binding52.51.1e-1679122146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg++T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Pavir.2KG570800.1.p  79 RGNMTAQEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 122
                          89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.5412373IPR017930Myb domain
SuperFamilySSF466892.4E-3024120IPR009057Homeodomain-like
SMARTSM007173.0E-142575IPR001005SANT/Myb domain
PfamPF002492.8E-152673IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-222780IPR009057Homeodomain-like
CDDcd001671.28E-102873No hitNo description
PROSITE profilePS5129423.89674128IPR017930Myb domain
SMARTSM007171.6E-1578126IPR001005SANT/Myb domain
PfamPF002491.8E-1579122IPR001005SANT/Myb domain
CDDcd001673.80E-1181122No hitNo description
Gene3DG3DSA:1.10.10.603.1E-2281126IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MAARDRREMS SDEESAAVAP PGDLRRGPWT VEEDLVLVNY ITAHGEGRWN ALARCAGLRR  60
TGKSCRLRWL NYLRPDLRRG NMTAQEQLLI LELHSRWGNR WSKIAQHLPG RTDNEIKNYW  120
RTRVHKHARQ LNCDVNSQQF KDLIRYLWMP RLLERITSSS AGDDGHRGAA AAASAWPVDD  180
VELSCTTAAS SSSSVSTPTD GTQQQQQQQV QLQQLVSPSG NDGSSSYSYS NNSSSMWDTL  240
YQPEPPQTAD YHHPTTAAEA AACSSWSDDY ESLLAPGLSL PGDMGMGLPE LGDTMMWGAD  300
DLWYTHIMGL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-2323120197MYB PROTO-ONCOGENE PROTEIN
1h8a_C1e-232312024120MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG570800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4741321e-119AF474132.1 Sorghum bicolor typical P-type R2R3 Myb protein (Myb63) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802225.11e-146transcription factor MYB2-like
TrEMBLA0A1E5VNG41e-151A0A1E5VNG4_9POAL; Transcription factor MYB108
STRINGPavir.Bb03718.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.11e-79myb domain protein 112