PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.2KG541100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 277aa MW: 30940.8 Da PI: 7.0117 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 19.8 | 1.5e-06 | 47 | 96 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ ++erE+r Rd+ N+ f eL +l ++ + + Ka iL +++ +k+L Pavir.2KG541100.1.p 47 KKVHKSEREKRKRDKQNDLFGELGNMLEPD----RQNNGKACILSDTTRMLKDL 96 678899**********************97....57788999999999988877 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.8E-10 | 43 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.15E-12 | 43 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.22E-4 | 44 | 101 | No hit | No description |
PROSITE profile | PS50888 | 11.293 | 46 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.6E-5 | 47 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 277 aa Download sequence Send to blast |
MTPLPSPAVT TGRAAARFVL SSPSPLPAMN ASSRPVLNNK CEKKAPKKVH KSEREKRKRD 60 KQNDLFGELG NMLEPDRQNN GKACILSDTT RMLKDLLSQV ESLRQENGSL KNESRYVALE 120 RNELLDENNM IRNEISELQN ELRMRMEGNP IWSHDATRSN LTAAHPHTTV FVLQHSPHPP 180 VIATMAPPLQ QLEVLEQSYT TSRRELQLFP EAASTEDTEP QQDQGISNHV TRPQARYATR 240 MTTLPAHVYP VLQRMEDEQC SSGTTGSGDE GAICNH* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pvr.20399 | 0.0 | callus| leaf| stem |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269|PubMed:25617318}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.2KG541100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025804247.1 | 1e-160 | transcription factor BHLH062-like | ||||
Refseq | XP_025804248.1 | 1e-160 | transcription factor BHLH062-like | ||||
Swissprot | Q69V10 | 1e-111 | BH062_ORYSJ; Transcription factor BHLH062 | ||||
TrEMBL | A0A2S3H2P0 | 1e-159 | A0A2S3H2P0_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Bb03409.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2481 | 38 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G47640.3 | 2e-31 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.2KG541100.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|