PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG529900.12.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YA
Protein Properties Length: 291aa    MW: 31641 Da    PI: 9.6478
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG529900.12.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA107.51e-33153209158
             CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                           +ep+YVNaKQy++Il+RRq+Rakle+++kl  k+rkpylheSRh+hA++R+RgsgGrF
  Pavir.2KG529900.12.p 153 EEPIYVNAKQYHAILRRRQTRAKLEAQNKL-VKGRKPYLHESRHRHAMKRARGSGGRF 209
                           69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.5E-38151212IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.992152212IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.5E-28154209IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.1E-25155177IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860157177IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.1E-25186209IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MPKLLREVED HPVHPMSKSN HGFLSGNDHE MKHLGHKIHD KDLSSESGQS HQEAPAVSES  60
SLNENTSTQS DNDEGHGKHN QDTVHTVLSM GKQGSAFLPP KLDYNRSFAC LPYTADAYYG  120
GVLTGYPPHA VAHPQQNHTT NAPVMLPAEP AEEEPIYVNA KQYHAILRRR QTRAKLEAQN  180
KLVKGRKPYL HESRHRHAMK RARGSGGRFL NTKQLQQTQQ HQASGGSSSS KVIGNSISSQ  240
SDPTPAPSTS TPSDTASASR ANQDRTCFPV GLRPAMNFSA PGGEGAKLVR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-23153214263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1193202RHRHAMKRAR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.65220.0callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG529900.12.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800585.10.0nuclear transcription factor Y subunit A-4-like isoform X1
RefseqXP_025800586.10.0nuclear transcription factor Y subunit A-4-like isoform X1
RefseqXP_025800587.10.0nuclear transcription factor Y subunit A-4-like isoform X1
RefseqXP_025800588.10.0nuclear transcription factor Y subunit A-4-like isoform X1
TrEMBLA0A2T7EYF80.0A0A2T7EYF8_9POAL; Uncharacterized protein
STRINGPavir.J05826.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.11e-37nuclear factor Y, subunit A3